View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7009_low_3 (Length: 518)
Name: NF7009_low_3
Description: NF7009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7009_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 3 - 319
Target Start/End: Original strand, 47257084 - 47257400
Alignment:
| Q |
3 |
tgaagaaacaaagaacacagatcagtttgagtttctttcaaacatcaacataagtgacaaaaacacagttttatcagctgatgaacttttctttgaagga |
102 |
Q |
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| T |
47257084 |
tgaaaaaacaaagaacacagatcagtttgagtttctttcaaacatcaacataagtgacaaaaacacagttttatcagctgatgaacttttctttgaagga |
47257183 |
T |
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| Q |
103 |
aaaatccttcccttttggcagatgcaacatctagagaaactcaacaagatcaacctcaaagaagaagaggaggaggaagtgattgaggtggtagtggaca |
202 |
Q |
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| T |
47257184 |
aaaatccttcccttttggcagatgcaacatctagagaaactcaacaagatcaacctcaaagaagaagaagaggaggaagtgattgaggtggtagtggaca |
47257283 |
T |
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| Q |
203 |
acaaagaagataataataatagtagagtaaattggtttgtggatgatgatccatcaccaaggccaccaaagtgcactgttttatggaaagagttactaag |
302 |
Q |
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| T |
47257284 |
acaaagaagataataataatagtagagtaaattggtttgtggatgatgatccatcaccaaggccaccaaagtgcactgttttatggaaagagttactaag |
47257383 |
T |
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| Q |
303 |
gttgaagaaacaaagag |
319 |
Q |
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| T |
47257384 |
gttgaagaaacaaagag |
47257400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 363 - 504
Target Start/End: Original strand, 47257444 - 47257585
Alignment:
| Q |
363 |
gaatgggagttcgctcggcgatgtagctgctaaagaaggttctaaaaacaaagagaatcagcatgtgaagaggataaagaaagggttggagagaacaaga |
462 |
Q |
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| T |
47257444 |
gaatgggagttcgctcggtgatgtagctgctaaagaaggttctaaaaacaaagagaatcagcatgtgaagaggataaagaaagggttggagagaacaaga |
47257543 |
T |
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| Q |
463 |
tcagctactattagaattagaccaatgattaatgtgccaatt |
504 |
Q |
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| T |
47257544 |
tcagctactattagaattagaccaatgattaatgtgccaatt |
47257585 |
T |
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