View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7009_low_5 (Length: 481)
Name: NF7009_low_5
Description: NF7009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7009_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 14)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 14 - 468
Target Start/End: Original strand, 39138883 - 39139337
Alignment:
| Q |
14 |
cctgtgttttgcaaataaactttcaggtatgttttaatttagatatggtttggtcagtcaccggtatctctccttttgtctcaatgttttggtattttac |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39138883 |
cctgggttttgcaaataaactttcaggtatgttttaatttagacatggtttggtcagtcaccggtatctctccttttgtctcaatgttttggtattttac |
39138982 |
T |
|
| Q |
114 |
attatatgtttatcaaatccatattgcatttttggatcttatcatttattgtgttttgttttgcctttttattcttgttgaaaatcagtgtaaactgtga |
213 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39138983 |
attatatgtttatcaaatccatattgcatttttggatcttatcatttattgtgtgttgttttgcctttttattcttgttgaaaatcagtgtaaactgtga |
39139082 |
T |
|
| Q |
214 |
gcttgtagaaattgatagaatgttgattacatgtgtaactcttatgaggtttgttatggatcttctcttgaatccatattgttagtgttatctcttgatg |
313 |
Q |
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|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39139083 |
acttaaagaaattgatagaatgttgattacatgtgtaactcttatgaggtttgttatggatcttctcttgaatccatattgttagtgttatctcttgatg |
39139182 |
T |
|
| Q |
314 |
cttgagaaaaaattatatgcaacatatttatgtgattatacaaatgttcttcatgaggttcaaattttatatcctattttgagaatgtggactcttagaa |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39139183 |
cttgagaaaaaattatatgcaacatatttatgtgattatacaaatgttcttgatgaggttcaaattttatatcctattttgagaatgtggactcttagaa |
39139282 |
T |
|
| Q |
414 |
ccgtgtttcacatctgttttcttaatttggtgtctggttctttggatgaacatgg |
468 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39139283 |
ccgtgtttcacatctgttttcttaatttggtgtctggttctttggatgaacatgg |
39139337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 239 - 421
Target Start/End: Complemental strand, 39472500 - 39472317
Alignment:
| Q |
239 |
attacatgtgtaactcttatgaggtttgttatggatcttctcttgaatccatattgttagtgttatctcttgatgcttgagaa-aaaattatatgcaaca |
337 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||| |||||| |||| ||||||| || ||||||||||||| ||||||| || |||| |
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|
| T |
39472500 |
attacatttgtaactcttatgaggtttgttatggatattctctaaaatccaaattgcaagtgttagctgctgatgcttgagaaaaaaattaaataaaaca |
39472401 |
T |
|
| Q |
338 |
tatttatgtgattatacaaatgttcttcatgaggttcaaattttatatcctattttgagaatgtggactcttagaaccgtgttt |
421 |
Q |
| |
|
||||| ||| ||| ||||| |||| || | | || ||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
39472400 |
tatttgtgtcattgtacaattgttattgaatatttttgaattttatatcctattttgagaatgtggaatcttagaaccgtgttt |
39472317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 220 - 363
Target Start/End: Original strand, 39452475 - 39452618
Alignment:
| Q |
220 |
agaaattgatagaatgttgattacatgtgtaactcttatgaggtttgttatggatcttctcttgaatccatattgttagtgttatctcttgatgcttgag |
319 |
Q |
| |
|
||||||| || |||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||| |||||| | |||| || |||||||||| | |
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| T |
39452475 |
agaaattaattgaatgttgattacaggtgtaactcttattaggtttgttatggatcttctcttaaattaatattgcaaccgttagctattgatgcttggg |
39452574 |
T |
|
| Q |
320 |
aaaaaattatatgcaacatatttatgtgattatacaaatgttct |
363 |
Q |
| |
|
|||||||||||| || ||||||| ||||| | |||||||||||| |
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| T |
39452575 |
aaaaaattatattcatcatatttgtgtgactgtacaaatgttct |
39452618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 39472701 - 39472583
Alignment:
| Q |
19 |
gttttgcaaataaactttcaggtatgttttaatttagatatggtttggtcagtcaccggtatctctccttttgtctcaatgttttggtattttacattat |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||| ||||| | | |
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|
| T |
39472701 |
gttttgcaaataaactttcaggtat--tttaatttagatatggtttggtcagtcacctgtatctct---------------ttttggtatgttaca-tgt |
39472620 |
T |
|
| Q |
119 |
atgtttatcaaatccatattgcatttttggatcttat |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
39472619 |
atgtttatcaaatccatattgcatttttggatcttat |
39472583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 423
Target Start/End: Complemental strand, 39412845 - 39412699
Alignment:
| Q |
275 |
cttctcttgaatccatattgttagtgttatctcttgatgcttgagaaaaaattatatgcaacatatttatgtgattatacaaatgttcttcatgaggttc |
374 |
Q |
| |
|
|||||||| ||| ||||||| ||||||| || | | || ||||||||||||||||| |||||||| | |||||| |||| ||||| || | ||||| |
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|
| T |
39412845 |
cttctcttaaattcatattgcaagtgttagctatcggtgtttgagaaaaaattatatacaacatatgt--gtgattgtacagatgtttttgaataggttt |
39412748 |
T |
|
| Q |
375 |
aaattttatatcctattttgagaatgtggactcttagaaccgtgtttca |
423 |
Q |
| |
|
||||| |||||||| |||||||||| || |||||||||||||||||| |
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|
| T |
39412747 |
gaatttgatatcctactttgagaatgctgaatcttagaaccgtgtttca |
39412699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 254
Target Start/End: Original strand, 39153398 - 39153469
Alignment:
| Q |
183 |
tattcttgttgaaaatcagtgtaaactgtgagcttgtagaaattgatagaatgttgattacatgtgtaactc |
254 |
Q |
| |
|
|||||||||| ||||||||| | ||||||| || ||||||||||||||||||||||||| |||||||||| |
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|
| T |
39153398 |
tattcttgtttgaaatcagtgcacactgtgaactaatagaaattgatagaatgttgattacttgtgtaactc |
39153469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 468
Target Start/End: Complemental strand, 39472300 - 39472249
Alignment:
| Q |
416 |
gtgtttcacatctgttttcttaatttggtgtctggttctttggatgaacatgg |
468 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||| |||| |
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|
| T |
39472300 |
gtgtttcacatctgttttcttaa-ttgatgtctggttctttggatgaatatgg |
39472249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 416 - 459
Target Start/End: Original strand, 39453330 - 39453373
Alignment:
| Q |
416 |
gtgtttcacatctgttttcttaatttggtgtctggttctttgga |
459 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39453330 |
gtgtttctcatctgttttcttaatttggtgtctgcttctttgga |
39453373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 419 - 464
Target Start/End: Complemental strand, 39412681 - 39412636
Alignment:
| Q |
419 |
tttcacatctgttttcttaatttggtgtctggttctttggatgaac |
464 |
Q |
| |
|
|||||||| ||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
39412681 |
tttcacatttgttttctttatttggtgtttggttctttggatgaac |
39412636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 66 - 158
Target Start/End: Complemental strand, 44749579 - 44749487
Alignment:
| Q |
66 |
gtcagtcaccggtatctctccttttgtctcaatgt-tttggtattttacattatatgtttatcaaatccatattgcatttttggatcttatcat |
158 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||| ||||| || |||||| |||| |||||||||||||||| || ||||| |||| ||||| |
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|
| T |
44749579 |
gtcagtcaccagtatctctccttttgtctc-ttgtgtttggaatgttacatcatataattatcaaatccatattccaattttgtatctaatcat |
44749487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 39153299 - 39153368
Alignment:
| Q |
14 |
cctgtgttttgcaaataaactttcaggtatgttttaatttagatatggtttggtcagtcaccggtatctctc |
85 |
Q |
| |
|
|||| |||||||||||||| |||| |||||||| |||||||| ||| |||||||||||| |||| |||||| |
|
|
| T |
39153299 |
cctgggttttgcaaataaagtttctggtatgtt--aatttagacatgctttggtcagtcatcggtctctctc |
39153368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 39472547 - 39472515
Alignment:
| Q |
224 |
attgatagaatgttgattacatgtgtaactctt |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
39472547 |
attgatagaatgttgattacatgtgtaactctt |
39472515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 423
Target Start/End: Original strand, 39153555 - 39153658
Alignment:
| Q |
320 |
aaaaaattatatgcaacatatttatgtgattatacaaatgttcttcatgaggttcaaattttatatcctattttgagaatgtggactcttagaaccgtgt |
419 |
Q |
| |
|
|||||||||||| ||||||||| ||||| ||| ||||||||| | | |||||||||| |||| ||||||||||||| | || |||||||| | ||| |
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|
| T |
39153555 |
aaaaaattatataaaacatatttgtgtgaacgtacgaatgttcttgaatacgttcaaatttaatattctattttgagaattttgaatcttagaaacatgt |
39153654 |
T |
|
| Q |
420 |
ttca |
423 |
Q |
| |
|
|||| |
|
|
| T |
39153655 |
ttca |
39153658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 464
Target Start/End: Original strand, 39153673 - 39153721
Alignment:
| Q |
416 |
gtgtttcacatctgttttcttaatttggtgtctggttctttggatgaac |
464 |
Q |
| |
|
||||||||||| |||||||||| ||||| ||||||| ||||||||||| |
|
|
| T |
39153673 |
gtgtttcacattcgttttcttaagttggtatctggttatttggatgaac |
39153721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 9 - 468
Target Start/End: Original strand, 19809135 - 19809593
Alignment:
| Q |
9 |
cagaacctgtgttttgcaaataaactttcaggtatgttttaatttagatatggtttggtcagtcaccggtatctctccttttgtctcaatgttttggtat |
108 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||| ||||||| |||| |
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|
| T |
19809135 |
cagaccctgggttttgcaaataaactttcaggtatgttttaatttagatatggtctggtcagtcaccgatatctctctttttgtctctatgtttttgtat |
19809234 |
T |
|
| Q |
109 |
tttacattatatgtttatcaaatccatattgcatttttggatcttatcatttattgtgttttgttttgcctttttattcttgttgaaaatcagtgtaaac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19809235 |
tttacattatatgtttatcaaatccatattgcatttttggatcttatcatttatggtgtgttgttttggctttttattcttgttgaaaatcagtgtaaac |
19809334 |
T |
|
| Q |
209 |
tgtgagcttgtagaaattgatagaatgttgattacatgtgtaactcttatgaggtttgttatggatcttctcttgaatccatattgttagtgttatctct |
308 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
19809335 |
tgtgtacttatagaaattgatagaatgttgattacatgtgtaactcttatgaggttt-ttatggatcttctcttgaacccattttgttagtgttatctct |
19809433 |
T |
|
| Q |
309 |
tgatgcttgagaaaaaattatatgcaacatatttatgtgattatacaaatgttcttcatgaggttcaaattttatatcctattttgagaatgtggactct |
408 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
19809434 |
tgatgcttgagaaaaaattatatacaacatatttgtgtgattatacaaatgttcttgatgaggttcaaattttatatcctaatttgagaatgtggaatct |
19809533 |
T |
|
| Q |
409 |
tagaaccgtgtttcacatctgttttcttaatttggtgtctggttctttggatgaacatgg |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19809534 |
tagaaccgtgtttcacatctgttttcttaatttggtgtctggttctttggatgaacatgg |
19809593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 361
Target Start/End: Original strand, 45343276 - 45343365
Alignment:
| Q |
272 |
gatcttctcttgaatccatattgttagtgttatctcttgatgcttgagaaaaaattatatgcaacatatttatgtgattatacaaatgtt |
361 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| | ||||| |||||||||| |||| | ||||||||| |||| || |||||||||| |
|
|
| T |
45343276 |
gatcttctcttaaatccatattgaaagtgttagccattgatttttgagaaaaacttatgtagaacatatttgtgtggttgtacaaatgtt |
45343365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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