View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7009_low_6 (Length: 473)
Name: NF7009_low_6
Description: NF7009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7009_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 5e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 12 - 253
Target Start/End: Original strand, 2929494 - 2929728
Alignment:
| Q |
12 |
aacctgtgtgtggaaggattgagtgttgttagggatgatagagcagtgatggttgcaatggagttggccaaagaatgctgcttccgtaacaacatcatca |
111 |
Q |
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| T |
2929494 |
aacctgggtgtggaaggattgagtgttgttagggatgatagagcagtgatggttgcaatggagttggccaaagaatgctgcttccgtaacaacatcatca |
2929593 |
T |
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| Q |
112 |
ttgtgaaatgagaatgaaggaatggaatgagaaaatcttggacttttg--ttttttctgtaatgtttgttgtcgttatctatactaggttgttagctagg |
209 |
Q |
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| T |
2929594 |
ttgagaaatgagaatgaaggaatggaatgagaaaatcttggacttttgttttttttctgcaa----tgttgtc-----ttatactaggttgttagctagg |
2929684 |
T |
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| Q |
210 |
ttggcccacaaagaaaaggttcggtacggtacgggataagtgtg |
253 |
Q |
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| T |
2929685 |
ttggcccacaaagaaaaggttcggtacggtacgggataagtgtg |
2929728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 374 - 451
Target Start/End: Original strand, 2929820 - 2929897
Alignment:
| Q |
374 |
accgtagatgctagtatattgttatcttaatattttcttatctttgtcatcttgagtttaatcattagggacaatgca |
451 |
Q |
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| T |
2929820 |
accgtagatgttagtatattgttatcttaatattttcttagctttgtcatcttgagtttaatcactagggacaatgca |
2929897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 310
Target Start/End: Original strand, 2929746 - 2929786
Alignment:
| Q |
271 |
caattgatccatgattaaa-taaacaagttagtcttttaaa |
310 |
Q |
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| T |
2929746 |
caattgatccatgattaaaataaacaagttagtcttataaa |
2929786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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