View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7009_low_7 (Length: 464)
Name: NF7009_low_7
Description: NF7009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7009_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 18 - 455
Target Start/End: Original strand, 38927021 - 38927458
Alignment:
| Q |
18 |
caacagcttcatcatattcaatgtcaaattgatctaacttaatctccatagcatcctcaacaaaaactatgttatataaaaagggtatgttcaaggattc |
117 |
Q |
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| T |
38927021 |
caacagcttcatcatattcaatgtcaaattgatctaacttaatctccatagcatcctcaacaaaaactatgttatataaaaagggtatgttcaaggattc |
38927120 |
T |
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| Q |
118 |
agcaaaactcattaaacttttgccaatttcttctaacttagccttgttagaaaatccaatagctgtgatcttcagaatttcaaccggcttttccttgcgg |
217 |
Q |
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| T |
38927121 |
agcaaaactcattaaacttttgccaatttcttctaacttagccttgttagaaaatccaatagctgtgatcttcagaatttcaaccggcttttccttgcgg |
38927220 |
T |
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| Q |
218 |
tccactaatgcttgcatgaaacatgtactcatcactccacatccaatattaagatgaatcaaatggatttttgtttgtgatgcaacatgttccactatag |
317 |
Q |
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| T |
38927221 |
tctactaatgcttgcatgaaacatgtactcatcactccacatccaatattaagatgaatcaaatggatttttgtttgtgatgcaacatgttccactatag |
38927320 |
T |
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| Q |
318 |
cttgtacaccagcaaattgcattacttgattgaaaggaattttttgatgacatttaactactatgttagtatctaattccattttatcaatcaattccgt |
417 |
Q |
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| T |
38927321 |
cttgtacaccagcaaattgcattacttgattgaaaggaattttttgatgacatttaactactatgttagtatctaattccattttatcaatcaattccgt |
38927420 |
T |
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| Q |
418 |
ctccttgtttctctcatttgatctatgcagtttcatct |
455 |
Q |
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| T |
38927421 |
ctccttgtttctctcatttgatctatgcagtttcatct |
38927458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 369
Target Start/End: Original strand, 44837828 - 44837896
Alignment:
| Q |
301 |
aacatgttccactatagcttgtacaccagcaaattgcattacttgattgaaaggaattttttgatgaca |
369 |
Q |
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| T |
44837828 |
aacatgttcaactatagcttgtattccagtaaattgcataacttgattaaaaggaagtttttgatgaca |
44837896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 44837613 - 44837674
Alignment:
| Q |
89 |
ttatataaaaagggtatgttcaaggattcagcaaaactcattaaacttttgccaatttcttc |
150 |
Q |
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| T |
44837613 |
ttatataaaaagggcaagttcaatgattcagcaaaactagctaaatttttgccagtttcttc |
44837674 |
T |
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