View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7009_low_8 (Length: 398)

Name: NF7009_low_8
Description: NF7009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7009_low_8
NF7009_low_8
[»] chr5 (1 HSPs)
chr5 (1-382)||(11173885-11174256)
[»] chr8 (3 HSPs)
chr8 (38-109)||(30221417-30221488)
chr8 (12-87)||(18968429-18968504)
chr8 (17-112)||(19005929-19006024)
[»] chr6 (2 HSPs)
chr6 (247-322)||(6213790-6213865)
chr6 (288-316)||(10214960-10214988)
[»] chr2 (1 HSPs)
chr2 (168-212)||(5453671-5453715)
[»] chr1 (1 HSPs)
chr1 (189-273)||(43328449-43328533)
[»] chr7 (1 HSPs)
chr7 (285-316)||(4628293-4628324)
[»] chr3 (2 HSPs)
chr3 (285-320)||(10794610-10794645)
chr3 (284-316)||(36348619-36348651)


Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 11174256 - 11173885
Alignment:
Q  1 ggtggaggaaaacaaagagtgggtggctgaggtggagccgggagttgatgttacctttttgtctcttcctgatggtggaaatgatctcaagcgaattcgc 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11174256 ggtggaggaaaacagagagtgggtggctgaggtggagccgggagttgatgttacctttttgtctcttcctgatggtggaaatgatctcaagcgaattcgc 11174157  T
Q  101 ttcaagtatgtttaaaaactattacaagctttgattatttttacttgtttagttctatttaatatattgacacatacacaaacaccgaacacaacactga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  11174156 ttcaagtatgtttaaaaactattacaagctttgattatttttacttgtttagttctatttaatatattgacacatacacaaacactggacacaacactga 11174057  T
Q  201 cacgttgacactcgtaatgatttgataaatagatgtaactgaatgtaaccatatgtgtcagtgtcgtattggtatcagataccaaacacgtcttcaattt 300  Q
    |||||||||||||||||||||||||||||| | |||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11174056 cacgttgacactcgtaatgatttgataaattgctgtaact----------atatgtgtcagtgtcgtattggtatcagataccaaacacgtcttcaattt 11173967  T
Q  301 gaagtgtcggtgctacgtaggtttagtttacgtctcataatttagttgtaacaatacttattgcttaatatttaaatgtgaa 382  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11173966 gaagtgtcagtgctacgtaggtttagtttacgtctcataatttagttgtaacaatacttattgcttaacatttaaatgtgaa 11173885  T

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Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 30221417 - 30221488
Alignment:
Q  38 ccgggagttgatgttacctttttgtctcttcctgatggtggaaatgatctcaagcgaattcgcttcaagtat 109  Q
    ||||| ||| || |||||||| ||||||||||| |||||||||||||||||||| |||||||||||| ||||    
T  30221417 ccgggggttcatattacctttgtgtctcttcctaatggtggaaatgatctcaagagaattcgcttcaggtat 30221488  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 18968429 - 18968504
Alignment:
Q  12 acaaagagtgggtggctgaggtggagccgggagttgatgttacctttttgtctcttcctgatggtggaaatgatct 87  Q
    |||| |||||| ||||  |||||||||  || |||||||||| |||| | ||||||||| ||||||||||||||||    
T  18968429 acaaggagtggttggcgcaggtggagcgaggggttgatgttatctttgtctctcttcctaatggtggaaatgatct 18968504  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 19005929 - 19006024
Alignment:
Q  17 gagtgggtggctgaggtggagccgggagttgatgttacctttttgtctcttcctgatggtggaaatgatctcaagcgaattcgcttcaagtatgtt 112  Q
    |||||||||||  |||||||||| || | |||||||| |||| ||| ||||| |  ||||||||||||||| |   |||||| |||||||||||||    
T  19005929 gagtgggtggcataggtggagccaggggctgatgttatctttgtgtatcttcttattggtggaaatgatctaagaagaattcacttcaagtatgtt 19006024  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 322
Target Start/End: Complemental strand, 6213865 - 6213790
Alignment:
Q  247 aaccatatgtgtcagtgtcgtattggtatcagataccaaacacgtcttcaatttgaagtgtcggtgctacgtaggt 322  Q
    ||||||||||||||||||||| ||||| ||||| | |||||| | ||||||| ||||||||||| ||||| |||||    
T  6213865 aaccatatgtgtcagtgtcgtgttggtgtcagacaacaaacaagccttcaatgtgaagtgtcggagctacataggt 6213790  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 316
Target Start/End: Original strand, 10214960 - 10214988
Alignment:
Q  288 acgtcttcaatttgaagtgtcggtgctac 316  Q
    |||||||||||||||||||||||||||||    
T  10214960 acgtcttcaatttgaagtgtcggtgctac 10214988  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 5453671 - 5453715
Alignment:
Q  168 tgacacatacacaaacaccgaacacaacactgacacgttgacact 212  Q
    ||||||||||||||||||| ||||||||||| |||||| ||||||    
T  5453671 tgacacatacacaaacaccaaacacaacactaacacgtagacact 5453715  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 273
Target Start/End: Original strand, 43328449 - 43328533
Alignment:
Q  189 acacaacactgacacgttgacactcgtaatgatttgataaatagatgtaactgaatgtaaccatatgtgtcagtgtcgtattggt 273  Q
    ||||||||||||||||||||||||  |||| |||||| |||  ||  ||| | |||||||||| |||||||| |||||| |||||    
T  43328449 acacaacactgacacgttgacacttataataatttgagaaaatgaaataatttaatgtaaccacatgtgtcattgtcgtgttggt 43328533  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 316
Target Start/End: Complemental strand, 4628324 - 4628293
Alignment:
Q  285 aacacgtcttcaatttgaagtgtcggtgctac 316  Q
    ||||||||||||||||||||||||||||||||    
T  4628324 aacacgtcttcaatttgaagtgtcggtgctac 4628293  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 320
Target Start/End: Original strand, 10794610 - 10794645
Alignment:
Q  285 aacacgtcttcaatttgaagtgtcggtgctacgtag 320  Q
    |||||||||||||| |||||||||||||||||||||    
T  10794610 aacacgtcttcaatatgaagtgtcggtgctacgtag 10794645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 316
Target Start/End: Complemental strand, 36348651 - 36348619
Alignment:
Q  284 aaacacgtcttcaatttgaagtgtcggtgctac 316  Q
    ||||||| |||||||||||||||||||||||||    
T  36348651 aaacacgacttcaatttgaagtgtcggtgctac 36348619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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