View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7010_high_2 (Length: 377)
Name: NF7010_high_2
Description: NF7010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7010_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 54 - 302
Target Start/End: Original strand, 3652748 - 3652994
Alignment:
| Q |
54 |
cctaactagtaaccacagagtagttatcatggtgcacaatttgtttgtcatctctatagcttgattatacacacatttttgcagaaaagagattgaaaca |
153 |
Q |
| |
|
|||| ||| |||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3652748 |
cctatctactaacaacagactaattatcatggtgcacaatttgtttgtcatctctataacttgattatacac--atttttgcagaaaagagattgaaaca |
3652845 |
T |
|
| Q |
154 |
gattaagtggagcttcctttccctataacttgatctattaacccctggaacgtgtaataaagcattttaaaatgattagaattagagccatttgcatagg |
253 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3652846 |
gattaagtggagcttgctttccctataacttgatccattaacccctggaacgtgtaataaagcattttaaaatgattagaattagagccacttgcatagg |
3652945 |
T |
|
| Q |
254 |
acagaactccttaatgagaagaaaagcatccaaaattttataaacagta |
302 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3652946 |
acagaacttcttaatgagaagaaaagcatccaaaattttataaacagta |
3652994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 36 - 366
Target Start/End: Original strand, 3658898 - 3659225
Alignment:
| Q |
36 |
tatcatatgtaacaacgccctaactagtaaccacagagtagttatcatggtgcacaatttgtttgtcatctctatagcttgattatacacacatttttgc |
135 |
Q |
| |
|
||||||| |||||| ||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||| ||||| |||||||||| ||||| |
|
|
| T |
3658898 |
tatcatacgtaacagtgccctaactagtaacaacagactagttatcatggtgcacaatttttttgtcatctctataacttgaccatacacacatgtttgc |
3658997 |
T |
|
| Q |
136 |
agaaaagagattgaaacagattaagtggagcttcctttccctataacttgatctattaacccctggaacgtgtaataaagcatttta-aaatgattagaa |
234 |
Q |
| |
|
| | ||||||||||||||||||||||||||||| ||||||||||||||||||| |||| || | |||||| ||| |||||||||| |||||| ||||| |
|
|
| T |
3658998 |
acataagagattgaaacagattaagtggagcttgatttccctataacttgatctgttaaaccttagaacgtacaatgaagcattttacaaatgactagaa |
3659097 |
T |
|
| Q |
235 |
ttagagccatttgcataggacagaactccttaatgagaagaaaagcatccaaaattttataaacagtatgccaagttttcatgttgtcaattttaaattg |
334 |
Q |
| |
|
||| |||| ||| ||| ||||| |||||||| ||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
3659098 |
ttacagcctttttcattggacaaaactcctt-atgagaaaaaaagcatccaaaatttcataaacagtatgccaagtt---atgttgtcaattttgaattg |
3659193 |
T |
|
| Q |
335 |
cttctgaatcatgcaagtatattctagttcat |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
3659194 |
cttctgaatcatgcaagtatattctagttcat |
3659225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 2 - 266
Target Start/End: Complemental strand, 3706720 - 3706454
Alignment:
| Q |
2 |
taatcattttcttacgctgtttttggactaaccatatcatatgtaacaacgccctaactagtaaccacagagtagttatcatggtgcacaatttgtttgt |
101 |
Q |
| |
|
||||||||||||||| |||| |||||| ||||| ||||||||||||||| |||||||| || ||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
3706720 |
taatcattttcttacactgtgtttggaataaccttatcatatgtaacaatgccctaacaagcaacaacagactagttatcatggtgcacaatttgtttgt |
3706621 |
T |
|
| Q |
102 |
catctctatag--cttgattatacacacatttttgcagaaaagagattgaaacagattaagtggagcttcctttccctataacttgatctattaacccct |
199 |
Q |
| |
|
||||||| || |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| | |
|
|
| T |
3706620 |
catctctctacaacttgatcatatacacatttttgcagaaaagagattgaaacagattaagtggagcttgctttccctgtaacttgatctgctaaccctt |
3706521 |
T |
|
| Q |
200 |
ggaacgtgtaataaagcattttaaaatgattagaattagagccatttgcataggacagaactcctta |
266 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
3706520 |
ggaacgtgtaatgaagcattttaaaatgattagaattagatccatttgcgtaggacagaactcctta |
3706454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 2 - 266
Target Start/End: Original strand, 3650817 - 3651083
Alignment:
| Q |
2 |
taatcattttcttacgctgtttttggactaaccatatcatatgtaacaacgccctaactagtaaccacagagtagttatcatggtgcacaatttgtttgt |
101 |
Q |
| |
|
||||||||||||||| |||| |||||| ||||| ||||||||||||||| |||||||| || ||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
3650817 |
taatcattttcttacactgtgtttggaataaccttatcatatgtaacaatgccctaacaagcaacaacagactagttatcatggtgcacaatttgtttgt |
3650916 |
T |
|
| Q |
102 |
catctctatagc--ttgattatacacacatttttgcagaaaagagattgaaacagattaagtggagcttcctttccctataacttgatctattaacccct |
199 |
Q |
| |
|
||||||| || ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| | |
|
|
| T |
3650917 |
catctctctacaatttgatcatatacacatttttgcagaaaagagattgaaacagattaagtggagcttgctttccctgtaacttgatctgctaaccctt |
3651016 |
T |
|
| Q |
200 |
ggaacgtgtaataaagcattttaaaatgattagaattagagccatttgcataggacagaactcctta |
266 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
3651017 |
ggaacgtgtaatgaagcattttaaaatgattagaattagatccatttgcgtaggacagaactcctta |
3651083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 3639535 - 3639609
Alignment:
| Q |
36 |
tatcatatgtaacaacgccctaactagtaaccacagagtagttatcatggtgcacaatttgtttgtcatctctata |
111 |
Q |
| |
|
||||||||||||| | | | ||||||||||| | ||| || |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
3639535 |
tatcatatgtaactatgtcttaactagtaacaa-agactaattatcatggtgcacgatttgtttatcatctctata |
3639609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University