View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7010_low_1 (Length: 552)
Name: NF7010_low_1
Description: NF7010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7010_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 18 - 509
Target Start/End: Original strand, 3611845 - 3612336
Alignment:
| Q |
18 |
atatgaaggggagctcctcaacctctggaaaccattcatctaactccgatgcctttgaaaagtcttcagaatcatctgatggacagtcctttgaaagttc |
117 |
Q |
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| T |
3611845 |
atatgaaggggagctcctcaacctctggaaaccattcatctaactccgatgcctttgaaaagtcttcagaatcatctgatggacagtcctttgaaagttc |
3611944 |
T |
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| Q |
118 |
cttccatggaagtaaaaactcaaggcccaaagttcgcccagtttcagctggtactgtttcaagcgttattggtaaaagttatgttagatccacgccatct |
217 |
Q |
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| T |
3611945 |
cttccatggaagtaaaaactcaaggcccaaagttcgcccagtttcagctggtactgtttcaagcgttattggtaaaagttatgttagatccacgccatct |
3612044 |
T |
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| Q |
218 |
acaagcgggcctaaagtgatgactaaaccgcctaagttggacgcaaaggacctgcctatgactggaatctatcgtgaaacgagtgtgtcaaagccaaatt |
317 |
Q |
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| T |
3612045 |
acaagcgggcctaaagtgatgactaaaccgcctaagttggacgcaaaggacctgcctatgactggaatctatcgtgaaacgagtgtgtcaaagccaaatt |
3612144 |
T |
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| Q |
318 |
cttcaaagcgagaccagcttcaagcgaacatggaggagttcttgtttaaaatgcttggagttggttttaagcttgatagaaaaatgatacgcgaagttct |
417 |
Q |
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|||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3612145 |
cttcaaagcgtgaccagcttcaagaggacatggaggagttcttgtttaaaatgcttggagttggttttaagcttgatagaaaaatgatacgcgaagttct |
3612244 |
T |
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| Q |
418 |
tggtacagaacactctaactttatgctgttgctcttaatatcttaacattgtacataattaattaattacgatatatcttgaaagtaaaatc |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3612245 |
tggtacagaacactctaactttatgctgttgctcttaatatcttaacattgtacataattaattaattacgatctatcttgaaagtaaaatc |
3612336 |
T |
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