View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7010_low_3 (Length: 280)
Name: NF7010_low_3
Description: NF7010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7010_low_3 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 3650277 - 3650004
Alignment:
| Q |
1 |
atgtgtacgtttagaatgtatctacagacgattttgtgggcattagggtaaacaatttgtgtataaattgtttcaacaaaaaagagtagggaacaagggg |
100 |
Q |
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||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3650277 |
atgtgtaagtttaaaatgcatctacagacgattttgtgggcattagggtaaacaatttgtgtataaattgtttcaacaaaaaagagtagggaacaaggcg |
3650178 |
T |
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| Q |
101 |
gaactctggactctgtacaagnnnnnnnnnnnnnnn-------accaaaaaactctgtataagctattctaccaaaataagcttatgaaaataagctgcc |
193 |
Q |
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| T |
3650177 |
gaactctggactctgtacaagttttttttttttttttttttttaccaaaaaactctgcataagctattctaccaaaataagcttatgaaaataagctgcc |
3650078 |
T |
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| Q |
194 |
agcttatgagtatatcatagactaatttcacaacctgttccaaacactagcataagataaatttatgtcatagt |
267 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3650077 |
agcttatgagtaaatcatagactaatttcacaacctgttccaaacacttgcataagataaatttatgtcatagt |
3650004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 3636899 - 3636854
Alignment:
| Q |
167 |
aaaataagcttatgaaaataagctgccagcttatgagtatatcata |
212 |
Q |
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| T |
3636899 |
aaaataagcttaagaaactaagctaccagcttataagtatatcata |
3636854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 9186 - 9231
Alignment:
| Q |
167 |
aaaataagcttatgaaaataagctgccagcttatgagtatatcata |
212 |
Q |
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| T |
9186 |
aaaataagcttaagaaactaagctaccagcttataagtatatcata |
9231 |
T |
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