View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7011_high_16 (Length: 237)

Name: NF7011_high_16
Description: NF7011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7011_high_16
NF7011_high_16
[»] chr7 (1 HSPs)
chr7 (18-222)||(5515238-5515438)
[»] chr4 (5 HSPs)
chr4 (18-212)||(35452154-35452343)
chr4 (18-163)||(35594075-35594215)
chr4 (97-203)||(21680345-21680451)
chr4 (36-181)||(33686813-33686954)
chr4 (114-161)||(8168086-8168133)
[»] chr8 (1 HSPs)
chr8 (18-218)||(37982386-37982580)
[»] chr6 (2 HSPs)
chr6 (97-191)||(4465696-4465790)
chr6 (121-163)||(23102846-23102888)
[»] chr1 (4 HSPs)
chr1 (123-220)||(32018416-32018513)
chr1 (110-220)||(44327073-44327183)
chr1 (93-203)||(49832144-49832254)
chr1 (139-220)||(20564656-20564737)
[»] chr2 (2 HSPs)
chr2 (18-70)||(19090134-19090186)
chr2 (92-209)||(16399938-16400057)
[»] chr3 (1 HSPs)
chr3 (27-63)||(43345169-43345205)


Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 5515438 - 5515238
Alignment:
Q  18 aaaatttggtagagcttttacatccattttgtagacgctaataaacgtgtattgtatagatttgatttatcgtcttttatttatttttgtatctaatagg 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    ||||||||||||||    
T  5515438 aaaatttggtagaacttttacatccattttgtagacgctaataaatgtgtattgtatagatttgatttatcgtcttttattt----ttgtatctaatagg 5515343  T
Q  118 attccttactttataatttggagtaagatgagaatgagaatagtaataaattaatagggtaatactctaaagtatgtatactcgttgaaattgaattaag 217  Q
     || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5515342 gtttcttactttataatttggagtaagatgagaatgacaatagtaataaattaatagggtaatactctaaagtatgtgtactcgttgaaattgaattaag 5515243  T
Q  218 agaat 222  Q
    |||||    
T  5515242 agaat 5515238  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 35452343 - 35452154
Alignment:
Q  18 aaaatttggtagagcttttacatccattttgtagacgctaataaacgtgtattgtatagatttgatttatcgtcttttatttatttttgtatctaatagg 117  Q
    ||||||| ||||||||| |||||| |||||||||| ||||||||||||| |||| ||||||||||  ||  |      ||||||||||||  |||||| |    
T  35452343 aaaattttgtagagcttgtacatctattttgtagaggctaataaacgtgaattgcatagatttgacctactgc-----atttatttttgttgctaatatg 35452249  T
Q  118 attccttactttataatttggagtaagatgagaatgagaatagtaataaattaatagggtaatactctaaagtatgtatactcgttgaaattgaa 212  Q
     ||| ||||||||||||||||| |||||| | ||||| |||||||| | ||||| ||| |||||  | ||||||||| |||| |||| |||||||    
T  35452248 gttctttactttataatttggaataagatcataatgacaatagtaagagattaaaaggataatatccaaaagtatgtgtacttgttggaattgaa 35452154  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 35594215 - 35594075
Alignment:
Q  18 aaaatttggtagagcttttacatccattttgtagacgctaataaacgtgtattgtatagatttgatttatcgtcttttatttatttttgtatctaatagg 117  Q
    ||||||| |||||| || |||||||||||||||||  ||||||||||||||||| |||||||| || ||| |||     ||||||||| | ||||||||     
T  35594215 aaaattttgtagagtttgtacatccattttgtagagactaataaacgtgtattgcatagatttaatatattgtc-----tttatttttatttctaataga 35594121  T
Q  118 attccttactttataatttggagtaagatgagaatgagaatagtaa 163  Q
     ||| ||||||| ||||||||| | |||||||||||| ||||||||    
T  35594120 gttctttactttgtaatttggaatgagatgagaatgacaatagtaa 35594075  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 203
Target Start/End: Original strand, 21680345 - 21680451
Alignment:
Q  97 tttatttttgtatctaataggattccttactttataatttggagtaagatgagaatgagaatagtaataaattaatagggtaatactctaaagtatgtat 196  Q
    ||||| ||||| ||||||||  ||||||||||| ||||||||| |||||||| ||||| |||||||| | ||||| | |||||||| | ||||||||| |    
T  21680345 tttatatttgtttctaatagagttccttactttgtaatttggaataagatgaaaatgacaatagtaagagattaagatggtaatacccaaaagtatgtgt 21680444  T
Q  197 actcgtt 203  Q
    || ||||    
T  21680445 acacgtt 21680451  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 181
Target Start/End: Complemental strand, 33686954 - 33686813
Alignment:
Q  36 tacatccattttgtagacgctaataaacgtgtattgtatagatttgatttatcgtcttttatttatttttgtatctaataggattccttactttataatt 135  Q
    ||||||||||||||||| |||||||| |||| |||| || |||||||| |||   ||    ||||||||||| ||||||| | || |||| ||| |||||    
T  33686954 tacatccattttgtagaggctaataagcgtgaattgcatggatttgatctattacct----tttatttttgtgtctaataaggtttcttattttgtaatt 33686859  T
Q  136 tggagtaagatgagaatgagaatagtaataaattaatagggtaata 181  Q
    | || |||||||| ||||| |||| ||| | ||||| |||||||||    
T  33686858 ttgaataagatgaaaatgacaataataagagattaagagggtaata 33686813  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 8168133 - 8168086
Alignment:
Q  114 taggattccttactttataatttggagtaagatgagaatgagaatagt 161  Q
    |||||||||||||||| |||||| |||| |||||||||||| ||||||    
T  8168133 taggattccttactttctaatttagagtgagatgagaatgacaatagt 8168086  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 37982386 - 37982580
Alignment:
Q  18 aaaatttggtagagcttttacatccattttgtagacgctaataaacgtgtattgtatagatttgatttatcgtcttttatttatttttgtatctaatagg 117  Q
    ||||||| |||||  || |||||  ||||||||||   ||||||||||| |||| ||||||||||| |||  |||||||    |||||||  |||| | |    
T  37982386 aaaattttgtagatattgtacatttattttgtagagattaataaacgtgcattgcatagatttgatatattatctttta----tttttgttgctaacaag 37982481  T
Q  118 attccttactttataatttggagtaagatgagaatgagaatagtaataaattaatagggtaatactctaaagtatgtatactcgttgaaattgaattaag 217  Q
    |||| ||||||||||||||| | |||||||||||| | |||||||| ||||||| ||||||||| ||  | |||||| ||| ||||| ||||||| ||||    
T  37982482 attctttactttataatttgaaataagatgagaataacaatagtaagaaattaagagggtaatattc--aggtatgtgtacccgttggaattgaaataag 37982579  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 191
Target Start/End: Original strand, 4465696 - 4465790
Alignment:
Q  97 tttatttttgtatctaataggattccttactttataatttggagtaagatgagaatgagaatagtaataaattaatagggtaatactctaaagta 191  Q
    ||||| |||||  |||||||| ||||||||||| ||||||| |  ||||||||||||| |||||||| | ||||| |||||||||||| ||||||    
T  4465696 tttatgtttgttgctaatagggttccttactttgtaatttgtaacaagatgagaatgacaatagtaagagattaaaagggtaatactcaaaagta 4465790  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 23102846 - 23102888
Alignment:
Q  121 ccttactttataatttggagtaagatgagaatgagaatagtaa 163  Q
    ||||||||| ||||||||| |||||||||||||| ||||||||    
T  23102846 ccttactttgtaatttggaataagatgagaatgacaatagtaa 23102888  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 220
Target Start/End: Original strand, 32018416 - 32018513
Alignment:
Q  123 ttactttataatttggagtaagatgagaatgagaatagtaataaattaatagggtaatactctaaagtatgtatactcgttgaaattgaattaagaga 220  Q
    ||||||| ||||||| | ||||||| |||||| |||| ||| | |||||||||||||||| | ||||||||| ||||||||  ||||||| |||||||    
T  32018416 ttactttgtaatttgaaataagatgcgaatgacaataataagagattaatagggtaatacccaaaagtatgtgtactcgttagaattgaaataagaga 32018513  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 220
Target Start/End: Original strand, 44327073 - 44327183
Alignment:
Q  110 ctaataggattccttactttataatttggagtaagatgagaatgagaatagtaataaattaatagggtaatactctaaagtatgtatactcgttgaaatt 209  Q
    |||||||| ||||||||||| ||||||| | |||||||||||||| |||||||| | ||||  | |||||||| | ||||||  | ||||||||| ||||    
T  44327073 ctaatagggttccttactttgtaatttgaaataagatgagaatgataatagtaaaagattatgacggtaatacccaaaagtacatgtactcgttggaatt 44327172  T
Q  210 gaattaagaga 220  Q
     || |||||||    
T  44327173 aaaataagaga 44327183  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 203
Target Start/End: Original strand, 49832144 - 49832254
Alignment:
Q  93 tttatttatttttgtatctaataggattccttactttataatttggagtaagatgagaatgagaatagtaataaattaatagggtaatactctaaagtat 192  Q
    ||||||||||| |||  |||||| | ||||||||||| ||||||||| | |||||||||||| || ||||| | ||||| ||||||||||   |||||||    
T  49832144 tttatttatttctgttgctaataaggttccttactttgtaatttggaatgagatgagaatgacaacagtaagagattaagagggtaataccaaaaagtat 49832243  T
Q  193 gtatactcgtt 203  Q
    || || |||||    
T  49832244 gtgtattcgtt 49832254  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 20564737 - 20564656
Alignment:
Q  139 agtaagatgagaatgagaatagtaataaattaatagggtaatactctaaagtatgtatactcgttgaaattgaattaagaga 220  Q
    |||||||||||||||| |||||||| ||||||| ||| |||||| | |||| |||| |||  |||| ||||||  |||||||    
T  20564737 agtaagatgagaatgacaatagtaaaaaattaagaggataatacacgaaagaatgtgtacgagttggaattgatataagaga 20564656  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 19090134 - 19090186
Alignment:
Q  18 aaaatttggtagagcttttacatccattttgtagacgctaataaacgtgtatt 70  Q
    ||||||| ||||||||  ||||||||||||||||| ||||||| |||||||||    
T  19090134 aaaattttgtagagctaatacatccattttgtagaggctaatatacgtgtatt 19090186  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 209
Target Start/End: Complemental strand, 16400057 - 16399938
Alignment:
Q  92 ttttatttatttttgtat--ctaataggattccttactttataatttggagtaagatgagaatgagaatagtaataaattaatagggtaatactctaaag 189  Q
    |||| ||||||||| |||  |||||||| |||| ||||||||||||| || | ||| ||| |||| |||| ||| | || || |||||| ||||  ||||    
T  16400057 ttttttttatttttttattgctaataggcttccctactttataatttagaatgagaagagcatgacaataataagagatcaagagggtagtactaaaaag 16399958  T
Q  190 tatgtatactcgttgaaatt 209  Q
    ||||| |||| |||||||||    
T  16399957 tatgtgtactggttgaaatt 16399938  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 43345205 - 43345169
Alignment:
Q  27 tagagcttttacatccattttgtagacgctaataaac 63  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  43345205 tagagcctttacatccattttgtagaggctaataaac 43345169  T

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