View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7011_high_3 (Length: 514)
Name: NF7011_high_3
Description: NF7011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7011_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Complemental strand, 42935017 - 42934522
Alignment:
| Q |
1 |
acgatttgctgtcagcactttgttcagttggagaatcggctgcaggcgcaatttctggtgtgggtgcaggagccggaacaggtggaatatcagtgccaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
42935017 |
acgatttgctgtcagcactttgttcagttggagaatcggctgcaggcgcaatttctggtgtgggtgcaggagccagaacaggtggaatatcagtgccaaa |
42934918 |
T |
|
| Q |
101 |
tattgcctcaggaagcaaaaccttatcaacttgataaattgcaacaggatcagtagcatgaactgcactagtcaccttagtgattgaccatcctgaatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42934917 |
tattgcctcaggaagcaaaaccttatcaacttgataaattgcaacaggatcagtagcatgaactgcactagtcaccttagtgattgaccatcctgaatta |
42934818 |
T |
|
| Q |
201 |
attttgacagttccggaattatcggtgaaattcaaagtgtaatcaccaccggcaaatgttggagttgaggcagtttggctaaggtttttgaaatcagcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42934817 |
attttgacagttccggaattatcggtgaaattcaaagtgtaatcaccaccggcaaatgttggagttgaggcagtttggctaaggtttttgaaatcagcaa |
42934718 |
T |
|
| Q |
301 |
gtgaatagaaatgtggcaaagcatggaaaagaatcacttgttttatctcatcatctttgagtttggataaagaaggtttcttcaatgatgcgaaagaact |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42934717 |
gtgaatagaaatgtggcaaagcatggaaaagaatcacttgttttatctcatcatctttgagtttggataaagaaggtttcttcaatgatgcgaaagaact |
42934618 |
T |
|
| Q |
401 |
gtcttttggaacaaagatagtgattccttcttcagtgttgtttgcttggttttggaaagtgtccaaaacttttgtggattgaaggtattgaagaaa |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42934617 |
gtcttttggaacaaagatagtgattccttcttcagtgttgtttgcttggttttggaaagtgtccaaaacttttgtggattgaaggtattgaagaaa |
42934522 |
T |
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