View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7011_high_8 (Length: 280)

Name: NF7011_high_8
Description: NF7011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7011_high_8
NF7011_high_8
[»] chr3 (58 HSPs)
chr3 (2-280)||(6555870-6556148)
chr3 (2-280)||(6521558-6521836)
chr3 (2-280)||(6528304-6528582)
chr3 (2-220)||(6522833-6523051)
chr3 (2-220)||(6840924-6841142)
chr3 (1-220)||(6522023-6522242)
chr3 (1-220)||(6840789-6841008)
chr3 (2-220)||(6521888-6522106)
chr3 (2-220)||(6522158-6522376)
chr3 (2-160)||(6521813-6521971)
chr3 (2-160)||(6522758-6522916)
chr3 (1-218)||(6840653-6840873)
chr3 (2-160)||(6522488-6522646)
chr3 (2-220)||(6556065-6556283)
chr3 (2-220)||(6522293-6522511)
chr3 (2-220)||(6522563-6522781)
chr3 (5-210)||(6734141-6734355)
chr3 (5-210)||(6781308-6781522)
chr3 (35-280)||(6734315-6734560)
chr3 (35-280)||(6781103-6781348)
chr3 (2-221)||(6840377-6840599)
chr3 (2-220)||(6840516-6840737)
chr3 (5-85)||(7586338-7586418)
chr3 (2-109)||(6796073-6796180)
chr3 (2-85)||(6945732-6945818)
chr3 (2-109)||(8453099-8453206)
chr3 (2-109)||(8470024-8470131)
chr3 (105-220)||(6522968-6523083)
chr3 (2-85)||(8570437-8570520)
chr3 (2-109)||(8588276-8588383)
chr3 (2-109)||(6450256-6450363)
chr3 (2-109)||(6730184-6730291)
chr3 (5-111)||(6481442-6481548)
chr3 (105-220)||(6841059-6841174)
chr3 (2-107)||(6592810-6592915)
chr3 (2-111)||(6932059-6932168)
chr3 (61-221)||(6796096-6796256)
chr3 (105-221)||(8570436-8570552)
chr3 (105-164)||(5297180-5297239)
chr3 (2-85)||(6734417-6734500)
chr3 (2-85)||(6781163-6781246)
chr3 (136-280)||(6945731-6945881)
chr3 (136-221)||(8453098-8453183)
chr3 (105-220)||(6450280-6450395)
chr3 (117-220)||(6528499-6528602)
chr3 (105-220)||(6730208-6730323)
chr3 (2-81)||(6915568-6915647)
chr3 (105-164)||(6942368-6942427)
chr3 (107-221)||(7586305-7586419)
chr3 (105-162)||(6932027-6932084)
chr3 (136-221)||(8588275-8588360)
chr3 (1-85)||(6555930-6556014)
chr3 (105-211)||(6481477-6481583)
chr3 (40-81)||(5248682-5248723)
chr3 (2-107)||(6167364-6167469)
chr3 (2-107)||(6723536-6723641)
chr3 (2-107)||(6880983-6881088)
chr3 (2-30)||(6942400-6942428)
[»] scaffold0425 (2 HSPs)
scaffold0425 (2-210)||(9123-9331)
scaffold0425 (1-280)||(8918-9197)
[»] scaffold1643 (2 HSPs)
scaffold1643 (2-85)||(634-720)
scaffold1643 (105-164)||(602-661)
[»] scaffold0958 (1 HSPs)
scaffold0958 (3-85)||(1275-1357)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 58)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 2 - 280
Target Start/End: Complemental strand, 6556148 - 6555870
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataaca 101  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||      
T  6556148 ttttgtaaagaaggaaggtgttgaggaagagcccttttcaattcgggacaatttcttattaaaaactctttaagcaaaggaaactctccaaggcataaac 6556049  T
Q  102 attcctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaag 201  Q
    |||||||||||  |||||||||| | |||  ||  |||||||||||||||||||||||||||||||||||||||||||| | |||||    |||||||||    
T  6556048 attcctccaacatgttgcaatcattgatccacaaattttgtaaagatggaagatgttgaggcaatactcttttcaatttaggacaattttctatataaag 6555949  T
Q  202 ctctttaagcagaggaaaccttacacatatccattcctcccagttgaccatatccgcaaatctcaaatattcaagggac 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6555948 ctctttaagcagaggaaaccttacacatatccattcctcccagttgaccatatcctcaaatctcaaatattcaagggac 6555870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 2 - 280
Target Start/End: Complemental strand, 6521836 - 6521558
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataaca 101  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||     |||||||| |||||||||||||||||||||||||||||||||||    
T  6521836 ttttgtaaagaaggaaggtgttgatgcagagcccttttcaattcgggacaaaaggatatagaaatctctttaagcaaaggaaactctccaaggcataaca 6521737  T
Q  102 attcctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaag 201  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||| | ||| ||||||||||     ||||||||||| | |||||   ||||||||||    
T  6521736 attcctccaactcgttgcaatcactgatcttcaatttttgtaaagaagaaaggtgttgaggcagggtgcttttcaatttaggacaattttttatataaag 6521637  T
Q  202 ctctttaagcagaggaaaccttacacatatccattcctcccagttgaccatatccgcaaatctcaaatattcaagggac 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||    
T  6521636 ctctttaagcagaggaaaccttacacatatccattcctcccagttgaccatatcctgaaatctcaaatattgaagggac 6521558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 2 - 280
Target Start/End: Complemental strand, 6528582 - 6528304
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataaca 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||     
T  6528582 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaacttgttatagaaatctctttaagcaaaggaaactctccaaggcataacc 6528483  T
Q  102 attcctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaag 201  Q
    |||||||||||| |||||||| | | ||   || |||||||||||| ||||| |||||||||||    ||||||||||| | |||||  |||||| ||||    
T  6528482 attcctccaacttgttgcaattatttatgcacaatttttgtaaagaaggaagctgttgaggcaaggtgcttttcaatttaggacaatttcttatagaaag 6528383  T
Q  202 ctctttaagcagaggaaaccttacacatatccattcctcccagttgaccatatccgcaaatctcaaatattcaagggac 280  Q
    ||||||||||| ||||||||||| ||||||||||| ||||||||| ||||||| | ||||| || || ||| |||||||    
T  6528382 ctctttaagcaaaggaaaccttagacatatccatttctcccagttcaccatattctcaaatatcgaaaattgaagggac 6528304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 6523051 - 6522833
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataaca 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6523051 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctccaaggcataaca 6522952  T
Q  102 attcctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaag 201  Q
    |||||||||||||||||||||||   |  | ||||||||||||||| ||||| ||||||||||   | |||||||||| || |||||  |||||| |||     
T  6522951 attcctccaactcgttgcaatcaaatacatccagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaat 6522852  T
Q  202 ctctttaagcagaggaaac 220  Q
    ||||||||||| |||||||    
T  6522851 ctctttaagcaaaggaaac 6522833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 6841142 - 6840924
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataaca 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6841142 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctccaaggcataaca 6841043  T
Q  102 attcctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaag 201  Q
    |||||||||||| ||||||||| | |||||  || ||||||||||| ||||| ||||||||||   | |||||||||| || |||||  |||||| |||     
T  6841042 attcctccaacttgttgcaatcccaaatctctagattttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaat 6840943  T
Q  202 ctctttaagcagaggaaac 220  Q
    ||||||||||| |||||||    
T  6840942 ctctttaagcaaaggaaac 6840924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 6522242 - 6522023
Alignment:
Q  1 attttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataac 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6522242 attttgtaaagaaggaaggtgttgatgcagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctccaaggcataac 6522143  T
Q  101 aattcctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaa 200  Q
    ||||||||||||| ||||||||  | ||||| ||||||||||||||| ||||| |||||| |||   | |||||||||| || |||||  |||||| |||    
T  6522142 aattcctccaacttgttgcaattccgaatctccagtttttgtaaagaaggaaggtgttgatgcagagcccttttcaattcgggacaatttcttatagaaa 6522043  T
Q  201 gctctttaagcagaggaaac 220  Q
     ||||||||||| |||||||    
T  6522042 tctctttaagcaaaggaaac 6522023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 6841008 - 6840789
Alignment:
Q  1 attttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6841008 attttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctccaaggcataac 6840909  T
Q  101 aattcctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaa 200  Q
    ||||||||||||| ||||||||| | |||||  || ||||||||||| ||||| ||||||||||   | |||||||||| || ||||||   |||| |||    
T  6840908 aattcctccaacttgttgcaatcccaaatctctagattttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatcggatatagaaa 6840809  T
Q  201 gctctttaagcagaggaaac 220  Q
     ||||||||||| |||||||    
T  6840808 tctctttaagcaaaggaaac 6840789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 6522106 - 6521888
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataaca 101  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6522106 ttttgtaaagaaggaaggtgttgatgcagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctccaaggcataaca 6522007  T
Q  102 attcctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaag 201  Q
    |||||||||||||||||||||||   |  | ||||||||||||||| ||||| ||||||||||   | |||||||||| || |||||  |||||| |||     
T  6522006 attcctccaactcgttgcaatcaaatacatccagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaat 6521907  T
Q  202 ctctttaagcagaggaaac 220  Q
    ||||||||||| |||||||    
T  6521906 ctctttaagcaaaggaaac 6521888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 6522376 - 6522158
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataaca 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6522376 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctccaaggcataaca 6522277  T
Q  102 attcctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaag 201  Q
    |||||||||||| ||||||||  | ||||| ||| ||||||||||| ||||| |||||| |||   | |||||||||| || |||||  |||||| |||     
T  6522276 attcctccaacttgttgcaattccgaatctccagattttgtaaagaaggaaggtgttgatgcagagcccttttcaattcgggacaatttcttatagaaat 6522177  T
Q  202 ctctttaagcagaggaaac 220  Q
    ||||||||||| |||||||    
T  6522176 ctctttaagcaaaggaaac 6522158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 2 - 160
Target Start/End: Complemental strand, 6521971 - 6521813
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataaca 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6521971 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctccaaggcataaca 6521872  T
Q  102 attcctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttga 160  Q
    |||||||||||| ||||||||  | ||||| ||||||||||||||| ||||| ||||||    
T  6521871 attcctccaacttgttgcaattccgaatctccagtttttgtaaagaaggaaggtgttga 6521813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 2 - 160
Target Start/End: Complemental strand, 6522916 - 6522758
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataaca 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6522916 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctccaaggcataaca 6522817  T
Q  102 attcctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttga 160  Q
    |||||||||||| ||||||||  | ||||| ||||||||||||||| ||||| ||||||    
T  6522816 attcctccaacttgttgcaattccgaatctccagtttttgtaaagaaggaaggtgttga 6522758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 6840873 - 6840653
Alignment:
Q  1 attttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||| ||||||||||||||||||||||||||||||||||    
T  6840873 attttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatcggatatagaaatctctttaagcaaaggaaactctccaaggcataac 6840774  T
Q  101 aattcctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttgagg---caatactcttttcaatttggaacaatcacttatat 197  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| ||||||||   |||  | ||||| |||||||  ||||  ||||||     
T  6840773 aattcctccaacttgttgcaatcacaaatcttcagtttttgtaaagaaggaaggtgttgaggtagcaaggccctttttaatttggggcaatttcttatag 6840674  T
Q  198 aaagctctttaagcagaggaa 218  Q
    ||| ||||||||||| |||||    
T  6840673 aaatctctttaagcaaaggaa 6840653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 2 - 160
Target Start/End: Complemental strand, 6522646 - 6522488
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataaca 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  6522646 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttgttatagaaatctctttaagcaaaggaaactctccaaggcataaca 6522547  T
Q  102 attcctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttga 160  Q
    |||||||||||| ||||||||  | ||||| ||||||||||||||| ||||| ||||||    
T  6522546 attcctccaacttgttgcaattccgaatctccagtttttgtaaagaaggaaggtgttga 6522488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 6556283 - 6556065
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataaca 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6556283 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgagacaatttcttatagaaaacactttaagcaaaggaaactctccaaggcataaca 6556184  T
Q  102 attcctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaag 201  Q
    |||||||||||||||||||||||   |    ||||||||||||||| ||||| |||||||| |   | |||||||||| || |||||  |||||  |||     
T  6556183 attcctccaactcgttgcaatcaaatacacccagtttttgtaaagaaggaaggtgttgaggaagagcccttttcaattcgggacaatttcttattaaaaa 6556084  T
Q  202 ctctttaagcagaggaaac 220  Q
    ||||||||||| |||||||    
T  6556083 ctctttaagcaaaggaaac 6556065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 6522511 - 6522293
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataaca 101  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||     |||||||| |||||||||||||||||||||||||||||||||||    
T  6522511 ttttgtaaagaaggaaggtgttgatgcagagcccttttcaattcgggacaaaaggatatagaaatctctttaagcaaaggaaactctccaaggcataaca 6522412  T
Q  102 attcctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaag 201  Q
    |||||| ||||||||||||||||   |  | ||||||||||||||| ||||| ||||||||||   | |||||||||| || |||||  |||||| |||     
T  6522411 attcctgcaactcgttgcaatcaaatacatccagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaat 6522312  T
Q  202 ctctttaagcagaggaaac 220  Q
    ||||||||||| |||||||    
T  6522311 ctctttaagcaaaggaaac 6522293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 6522781 - 6522563
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataaca 101  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||     |||||||| |||||||||||||||||||||||||||||||||||    
T  6522781 ttttgtaaagaaggaaggtgttgatgcagagcccttttcaattcgggacaaaaggatatagaaatctctttaagcaaaggaaactctccaaggcataaca 6522682  T
Q  102 attcctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaag 201  Q
    |||||| ||||||||||||||||   |  | ||||||||||||||| ||||| ||||||||||   | |||||||||| || |||||   ||||| |||     
T  6522681 attcctgcaactcgttgcaatcaaatacatccagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttgttatagaaat 6522582  T
Q  202 ctctttaagcagaggaaac 220  Q
    ||||||||||| |||||||    
T  6522581 ctctttaagcaaaggaaac 6522563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 5 - 210
Target Start/End: Original strand, 6734141 - 6734355
Alignment:
Q  5 tgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataacaatt 104  Q
    |||||||||||||||||||| |||||||||||||||||||| | ||| ||   ||||||||  ||||||||||||||||||||||||||||||||| |||    
T  6734141 tgtaaagaaggaaggtgttgtggcagagcccttttcaattcagaacatttgaatatagaaatatctttaagcaaaggaaactctccaaggcataaccatt 6734240  T
Q  105 cctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagat---------gttgaggcaatactcttttcaatttggaacaatcacttat 195  Q
    ||||||||  |||||||||| | |||  || ||||||||||||||||||||         ||||||||||||||||||| ||||||||||||| ||||||    
T  6734241 cctccaacatgttgcaatcattgatccgcaatttttgtaaagatggaagatgtggaagaagttgaggcaatactcttttgaatttggaacaatgacttat 6734340  T
Q  196 ataaagctctttaag 210  Q
    |||||||||||||||    
T  6734341 ataaagctctttaag 6734355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 6781522 - 6781308
Alignment:
Q  5 tgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataacaatt 104  Q
    |||||||||||||||||||| |||||||||||||||||||| | ||| ||   ||||||||  ||||||||||||||||||||||||||||||||| |||    
T  6781522 tgtaaagaaggaaggtgttgtggcagagcccttttcaattcagaacatttgaatatagaaatatctttaagcaaaggaaactctccaaggcataaccatt 6781423  T
Q  105 cctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagat---------gttgaggcaatactcttttcaatttggaacaatcacttat 195  Q
    ||||||||  |||||||||| | |||  || ||||||||||||||||||||         ||||||||||||||||||| ||||||||||||| ||||||    
T  6781422 cctccaacatgttgcaatcattgatccgcaatttttgtaaagatggaagatgtggaagaagttgaggcaatactcttttgaatttggaacaatgacttat 6781323  T
Q  196 ataaagctctttaag 210  Q
    |||||||||||||||    
T  6781322 ataaagctctttaag 6781308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 35 - 280
Target Start/End: Original strand, 6734315 - 6734560
Alignment:
Q  35 cttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataacaattcctccaactcgttgcaatcactaatcttca 134  Q
    ||||| |||| || |||||  |||||| ||| |||||||||  || ||||| || |||| |||||| ||||||||||||| |||||| ||||||| ||||    
T  6734315 cttttgaatttggaacaatgacttatataaagctctttaagagaaagaaacccttcaagacataaccattcctccaactctttgcaaccactaatattca 6734414  T
Q  135 gtttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaagctctttaagcagaggaaaccttacacatatcca 234  Q
     |||||||||||| ||||||||||||||||     | ||||| ||| | |||||   ||||| |||||||| |||||| |||||||||||||||||||||    
T  6734415 atttttgtaaagaaggaagatgttgaggcagggtgcctttcagtttaggacaatttgttatagaaagctctataagcaaaggaaaccttacacatatcca 6734514  T
Q  235 ttcctcccagttgaccatatccgcaaatctcaaatattcaagggac 280  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  6734515 ttcctcccagttgaccatatcctcaaatctcaaatattcaagggac 6734560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 35 - 280
Target Start/End: Complemental strand, 6781348 - 6781103
Alignment:
Q  35 cttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataacaattcctccaactcgttgcaatcactaatcttca 134  Q
    ||||| |||| || |||||  |||||| ||| |||||||||  || ||||| || |||| |||||| ||||||||||||| |||||| ||||||| ||||    
T  6781348 cttttgaatttggaacaatgacttatataaagctctttaagagaaagaaacccttcaagacataaccattcctccaactctttgcaaccactaatattca 6781249  T
Q  135 gtttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaagctctttaagcagaggaaaccttacacatatcca 234  Q
     |||||||||||| ||||||||||||||||     | ||||| ||| | |||||   ||||| |||||||| |||||| |||||||||||||||||||||    
T  6781248 atttttgtaaagaaggaagatgttgaggcagggtgcctttcagtttaggacaatttgttatagaaagctctataagcaaaggaaaccttacacatatcca 6781149  T
Q  235 ttcctcccagttgaccatatccgcaaatctcaaatattcaagggac 280  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  6781148 ttcctcccagttgaccatatcctcaaatctcaaatattcaagggac 6781103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 6840599 - 6840377
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataaca 101  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||    |||| ||| |||||||||||||||||||||||||||||||||||    
T  6840599 ttttgtaaagaaggaaggtgttgtggcagagcccttttcaatttgggacaatcgaatatataaatctctttaagcaaaggaaactctccaaggcataaca 6840500  T
Q  102 attcctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttgaggcaatact---cttttcaatttggaacaatcacttatata 198  Q
    |||||||||||| |||||||| |||||||| ||| ||||||||||| | ||| |||| |||||  |||    |||||||||||| ||| |  |||||| |    
T  6840499 attcctccaacttgttgcaataactaatctccagcttttgtaaagaagtaaggtgtttaggcagcactgcctttttcaatttgggacattttcttataga 6840400  T
Q  199 aagctctttaagcagaggaaacc 221  Q
    || || |||||||| ||||||||    
T  6840399 aatctttttaagcaaaggaaacc 6840377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 6840737 - 6840516
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcaga---gcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcata 98  Q
    |||||||||||||||||||||||||| ||    |||||||| |||| ||| |||||||||||||||| ||||||||||||||||| | || |||| || |    
T  6840737 ttttgtaaagaaggaaggtgttgaggtagcaaggccctttttaatttggggcaatttcttatagaaatctctttaagcaaaggaatcccttcaagacaaa 6840638  T
Q  99 acaattcctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatata 198  Q
    || ||| |||||||||||||||||||   |  | ||||||||||||||| ||||| ||||| ||||   | ||||||||||||| ||||||   ||||||    
T  6840637 accatttctccaactcgttgcaatcaaatacatgcagtttttgtaaagaaggaaggtgttgtggcagagcccttttcaatttgggacaatcgaatatata 6840538  T
Q  199 aagctctttaagcagaggaaac 220  Q
    || ||||||||||| |||||||    
T  6840537 aatctctttaagcaaaggaaac 6840516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 7586338 - 7586418
Alignment:
Q  5 tgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaac 85  Q
    |||||||||||||||||||||||||||||||||||||| | |||||| ||| ||||||||| |||||||||||||||||||    
T  7586338 tgtaaagaaggaaggtgttgaggcagagcccttttcaacttgggacatttttttatagaaagctctttaagcaaaggaaac 7586418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 109
Target Start/End: Complemental strand, 6796180 - 6796073
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataaca 101  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||| ||||| || ||||| ||| ||||||||||||||||||| || |||| || |||     
T  6796180 ttttgtaaagaaggaaggttttgaggctgagcccttttcaattcgtgacaacttgttatataaagctctttaagcaaaggaaacccttcaagacaaaacc 6796081  T
Q  102 attcctcc 109  Q
    ||||||||    
T  6796080 attcctcc 6796073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 6945732 - 6945818
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcaga---gcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaac 85  Q
    |||||||||||||||||||||||||||||    ||||||||||||| ||||||||||||||||| || |||||||||||||||||||    
T  6945732 ttttgtaaagaaggaaggtgttgaggcagcaaggcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaac 6945818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 109
Target Start/End: Original strand, 8453099 - 8453206
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataaca 101  Q
    ||||||||||||||||||||||||||||| | | ||||||||| |||||| | ||||||| ||| ||||||||||||||||||| || |||| || |||     
T  8453099 ttttgtaaagaaggaaggtgttgaggcagggacattttcaatttgggacattctcttatataaagctctttaagcaaaggaaacccttcaagacacaacc 8453198  T
Q  102 attcctcc 109  Q
    ||||||||    
T  8453199 attcctcc 8453206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 109
Target Start/End: Original strand, 8470024 - 8470131
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataaca 101  Q
    ||||||||||||||||||||||||||||  || ||| |||||||||||||  || ||||||||| ||||||||||||||||||| || |||| || |||     
T  8470024 ttttgtaaagaaggaaggtgttgaggcaatgcgcttctcaattcgggacagctttttatagaaagctctttaagcaaaggaaacccttcaagacacaacc 8470123  T
Q  102 attcctcc 109  Q
    ||||||||    
T  8470124 attcctcc 8470131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 105 - 220
Target Start/End: Complemental strand, 6523083 - 6522968
Alignment:
Q  105 cctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaagctc 204  Q
    |||||| || |||||||| |||||||||||||||||||||||| ||||| ||||||||||   | |||||||||| || |||||  |||||| ||| |||    
T  6523083 cctccatcttgttgcaattactaatcttcagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctc 6522984  T
Q  205 tttaagcagaggaaac 220  Q
    |||||||| |||||||    
T  6522983 tttaagcaaaggaaac 6522968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 8570520 - 8570437
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaac 85  Q
    ||||||||||||||||||||| ||||||| ||||||||||||  | |||||| ||||||||||| || ||||||||||||||||    
T  8570520 ttttgtaaagaaggaaggtgtcgaggcagggcccttttcaatctgtgacaatatcttatagaaagctttttaagcaaaggaaac 8570437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 109
Target Start/End: Original strand, 8588276 - 8588383
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataaca 101  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||| |  |||||| | | || |||||||||||||||| ||  |||||||| |     
T  8588276 ttttgtaaagaaggaaggtgttgaggcaaagcccttttcaattcaggacattcacttataaatagctttttaagcaaaggaaacccttgaaggcatatcc 8588375  T
Q  102 attcctcc 109  Q
    ||||||||    
T  8588376 attcctcc 8588383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 109
Target Start/End: Complemental strand, 6450363 - 6450256
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataaca 101  Q
    |||| |||||||||||||||||||||||| |||||||||| || |||||||||||||||   || ||||||||| | |||||||||| |||   |||||     
T  6450363 ttttctaaagaaggaaggtgttgaggcagggcccttttcagtttgggacaatttcttatttcaagctctttaagtagaggaaactcttcaataaataacc 6450264  T
Q  102 attcctcc 109  Q
    ||||||||    
T  6450263 attcctcc 6450256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 109
Target Start/End: Complemental strand, 6730291 - 6730184
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataaca 101  Q
    |||| |||||||||||||||||||||||| |||||||||| || |||||||||||||||   || ||||||||| | |||||||||| |||   |||||     
T  6730291 ttttctaaagaaggaaggtgttgaggcagggcccttttcagtttgggacaatttcttatttcaagctctttaagtagaggaaactcttcaataaataacc 6730192  T
Q  102 attcctcc 109  Q
    ||||||||    
T  6730191 attcctcc 6730184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 6481548 - 6481442
Alignment:
Q  5 tgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataacaatt 104  Q
    ||||||||||||||||||||||| || ||||||||||||| |||||||| | |||||| || |||||||||| |  ||||| || || | |||||| |||    
T  6481548 tgtaaagaaggaaggtgttgaggaagggcccttttcaatttgggacaatcttttatagtaagctctttaagcgacagaaacccttcatgacataaccatt 6481449  T
Q  105 cctccaa 111  Q
    |||||||    
T  6481448 cctccaa 6481442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 220
Target Start/End: Complemental strand, 6841174 - 6841059
Alignment:
Q  105 cctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaagctc 204  Q
    |||||| || ||||||||| | ||||| ||||||||||||||| ||||| ||||||||||   | |||||||||| || |||||  |||||| ||| |||    
T  6841174 cctccatcttgttgcaatcccaaatctgcagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctc 6841075  T
Q  205 tttaagcagaggaaac 220  Q
    |||||||| |||||||    
T  6841074 tttaagcaaaggaaac 6841059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 6592915 - 6592810
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataaca 101  Q
    ||||| ||||||||||||||||||||||| || |||||||| | |||||||| | ||||| ||| ||||| ||||||||| ||  || |||| ||||||     
T  6592915 ttttgcaaagaaggaaggtgttgaggcagggctcttttcaacttgggacaatgttttatacaaagctcttgaagcaaagggaaaccttcaagacataacc 6592816  T
Q  102 attcct 107  Q
    ||||||    
T  6592815 attcct 6592810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 6932059 - 6932168
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataaca 101  Q
    |||||||||||||||||||||||||| |||||||||||||||||| | ||   ||||    ||| |||| |||||||||||||| |  |||| ||||||     
T  6932059 ttttgtaaagaaggaaggtgttgaggaagagcccttttcaattcgagccatcctcttgagtaaagctctctaagcaaaggaaacccatcaagacataacc 6932158  T
Q  102 attcctccaa 111  Q
    ||||||||||    
T  6932159 attcctccaa 6932168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 221
Target Start/End: Complemental strand, 6796256 - 6796096
Alignment:
Q  61 agaaaactctttaagcaaaggaaactctccaaggcataacaattcctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttga 160  Q
    ||||| ||||||||||||||||||||||||| |||||||| ||||||| |||    |||||| | | |||  || |||||||||||| ||||| | ||||    
T  6796256 agaaatctctttaagcaaaggaaactctccagggcataaccattcctcaaacatcatgcaattattgatccacaatttttgtaaagaaggaaggttttga 6796157  T
Q  161 ggcaatactcttttcaatttggaacaatcacttatataaagctctttaagcagaggaaacc 221  Q
    |||    | |||||||||| |  ||||    ||||||||||||||||||||| ||||||||    
T  6796156 ggctgagcccttttcaattcgtgacaacttgttatataaagctctttaagcaaaggaaacc 6796096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 105 - 221
Target Start/End: Complemental strand, 8570552 - 8570436
Alignment:
Q  105 cctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaagctc 204  Q
    |||||||||  ||||||||||| |||| ||||||||||||||| ||||| ||| ||||||   | ||||||||| ||  |||||  |||||| ||||||     
T  8570552 cctccaacttcttgcaatcactgatctccagtttttgtaaagaaggaaggtgtcgaggcagggcccttttcaatctgtgacaatatcttatagaaagctt 8570453  T
Q  205 tttaagcagaggaaacc 221  Q
    |||||||| ||||||||    
T  8570452 tttaagcaaaggaaacc 8570436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 164
Target Start/End: Original strand, 5297180 - 5297239
Alignment:
Q  105 cctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttgaggca 164  Q
    |||||||||| | ||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  5297180 cctccaactcttggcaatcactaatcttcaatttttgcaaagaaggaagatgttgaggca 5297239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 6734417 - 6734500
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaac 85  Q
    ||||||||||||||||| ||||||||||| |  | ||||| ||  ||||||||| ||||||||| |||| ||||||||||||||    
T  6734417 ttttgtaaagaaggaagatgttgaggcagggtgcctttcagtttaggacaatttgttatagaaagctctataagcaaaggaaac 6734500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 6781246 - 6781163
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaac 85  Q
    ||||||||||||||||| ||||||||||| |  | ||||| ||  ||||||||| ||||||||| |||| ||||||||||||||    
T  6781246 ttttgtaaagaaggaagatgttgaggcagggtgcctttcagtttaggacaatttgttatagaaagctctataagcaaaggaaac 6781163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 280
Target Start/End: Original strand, 6945731 - 6945881
Alignment:
Q  136 tttttgtaaagatggaagatgttgaggcaata---ctcttttcaatttggaacaatcacttatataaagctctttaagcagaggaaaccttac---acat 229  Q
    |||||||||||| ||||| ||||||||||  |   | ||||||||||||| |||||  ||||||  |||||||||||||| |||||||||| |   |||     
T  6945731 tttttgtaaagaaggaaggtgttgaggcagcaaggcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacctttcaggacaa 6945830  T
Q  230 atccattcctcccagttgaccatatccgcaaatctcaaatattcaagggac 280  Q
    | |||||||||||| |||||||||| | | ||| |||||  ||||||||||    
T  6945831 aaccattcctcccaattgaccatatgctccaatttcaaaacttcaagggac 6945881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 8453098 - 8453183
Alignment:
Q  136 tttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaagctctttaagcagaggaaacc 221  Q
    |||||||||||| ||||| ||||||||||      |||||||||||| ||| || |||||||||||||||||||||| ||||||||    
T  8453098 tttttgtaaagaaggaaggtgttgaggcagggacattttcaatttgggacattctcttatataaagctctttaagcaaaggaaacc 8453183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 220
Target Start/End: Complemental strand, 6450395 - 6450280
Alignment:
Q  105 cctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaagctc 204  Q
    |||||||||| ||||||  |  |||||||| ||||| |||||| ||||| ||||||||||   | ||||||| ||||| |||||  ||||| | ||||||    
T  6450395 cctccaactcattgcaacaaacaatcttcaatttttctaaagaaggaaggtgttgaggcagggcccttttcagtttgggacaatttcttatttcaagctc 6450296  T
Q  205 tttaagcagaggaaac 220  Q
    |||||| |||||||||    
T  6450295 tttaagtagaggaaac 6450280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 220
Target Start/End: Complemental strand, 6528602 - 6528499
Alignment:
Q  117 tgcaatcactaatcttcagtttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaagctctttaagcagagg 216  Q
    |||||||| |||||| ||||||||||||||| ||||| ||||||||||   | |||||||||| || ||||    ||||| ||| ||||||||||| |||    
T  6528602 tgcaatcaataatctccagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaacttgttatagaaatctctttaagcaaagg 6528503  T
Q  217 aaac 220  Q
    ||||    
T  6528502 aaac 6528499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 220
Target Start/End: Complemental strand, 6730323 - 6730208
Alignment:
Q  105 cctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaagctc 204  Q
    |||||||||| ||||||  |  |||||||| ||||| |||||| ||||| ||||||||||   | ||||||| ||||| |||||  ||||| | ||||||    
T  6730323 cctccaactctttgcaacaaacaatcttcaatttttctaaagaaggaaggtgttgaggcagggcccttttcagtttgggacaatttcttatttcaagctc 6730224  T
Q  205 tttaagcagaggaaac 220  Q
    |||||| |||||||||    
T  6730223 tttaagtagaggaaac 6730208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 6915568 - 6915647
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaagg 81  Q
    ||||| ||||||||||||||||||||||| |  |||||||| | |||||||| | ||||| ||| ||||| |||||||||    
T  6915568 ttttgcaaagaaggaaggtgttgaggcagggaacttttcaacttgggacaatgttttatacaaagctcttgaagcaaagg 6915647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 164
Target Start/End: Original strand, 6942368 - 6942427
Alignment:
Q  105 cctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttgaggca 164  Q
    |||||| || |||||||| || ||||||||||||||||||||| ||||| ||||||||||    
T  6942368 cctccatcttgttgcaataaccaatcttcagtttttgtaaagaaggaaggtgttgaggca 6942427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 221
Target Start/End: Original strand, 7586305 - 7586419
Alignment:
Q  107 tccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaagctctt 206  Q
    |||||||  ||||||||  |||||| |||||| |||||||| ||||| ||||||||||   | |||||||| |||| ||| |   ||||| |||||||||    
T  7586305 tccaacttcttgcaatctttaatctccagtttctgtaaagaaggaaggtgttgaggcagagcccttttcaacttgggacatttttttatagaaagctctt 7586404  T
Q  207 taagcagaggaaacc 221  Q
    |||||| ||||||||    
T  7586405 taagcaaaggaaacc 7586419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 6932027 - 6932084
Alignment:
Q  105 cctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttgagg 162  Q
    |||| |||| || |||||||||||||| ||||||||||||||| ||||| ||||||||    
T  6932027 cctcaaacttgtggcaatcactaatctccagtttttgtaaagaaggaaggtgttgagg 6932084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 8588275 - 8588360
Alignment:
Q  136 tttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaagctctttaagcagaggaaacc 221  Q
    |||||||||||| ||||| |||||||||||  | ||||||||||  | ||| ||||||||| | |||| |||||||| ||||||||    
T  8588275 tttttgtaaagaaggaaggtgttgaggcaaagcccttttcaattcaggacattcacttataaatagctttttaagcaaaggaaacc 8588360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 6556014 - 6555930
Alignment:
Q  1 attttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaac 85  Q
    |||||||||||| ||||| ||||||||||   | ||||||||||  |||||||||  |||| ||| ||||||||||| |||||||    
T  6556014 attttgtaaagatggaagatgttgaggcaatactcttttcaatttaggacaattttctatataaagctctttaagcagaggaaac 6555930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 211
Target Start/End: Complemental strand, 6481583 - 6481477
Alignment:
Q  105 cctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaagctc 204  Q
    ||||||||| |||||||| | |||||  || ||| |||||||| ||||| |||||||| |   | ||||||||||||| ||||||  |||||  ||||||    
T  6481583 cctccaacttgttgcaattaataatcgacaatttctgtaaagaaggaaggtgttgaggaagggcccttttcaatttgggacaatcttttatagtaagctc 6481484  T
Q  205 tttaagc 211  Q
    |||||||    
T  6481483 tttaagc 6481477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 5248682 - 5248723
Alignment:
Q  40 caattcgggacaatttcttatagaaaactctttaagcaaagg 81  Q
    ||||| |||||||||||||||||||| || ||||||||||||    
T  5248682 caatttgggacaatttcttatagaaagctgtttaagcaaagg 5248723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 6167364 - 6167469
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataaca 101  Q
    ||||| ||| ||||||| || ||||||||||| |||||||| | |||||| | | ||| | ||| ||||| ||||||||| ||  || |||||||||||     
T  6167364 ttttgcaaacaaggaagatgatgaggcagagcacttttcaacttgggacattgttttagacaaagctcttgaagcaaagggaaaccttcaaggcataacc 6167463  T
Q  102 attcct 107  Q
    ||||||    
T  6167464 attcct 6167469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 6723641 - 6723536
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataaca 101  Q
    ||||| || |||||||||||||||||||| |  |||||||| | |||||||| | ||||| ||| |||||  |||||||| ||  || |||| ||||||     
T  6723641 ttttgcaatgaaggaaggtgttgaggcagggaacttttcaacttgggacaatgttttatacaaagctcttgtagcaaagggaaaccttcaagacataacc 6723542  T
Q  102 attcct 107  Q
    ||||||    
T  6723541 attcct 6723536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 6880983 - 6881088
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataaca 101  Q
    ||||| |||||||| ||||||||||| || || |||||||| | |||||||| | ||||| ||| || || ||||||||| ||  || |||| ||||||     
T  6880983 ttttgcaaagaagggaggtgttgaggaagggcacttttcaacttgggacaatgttttatacaaagcttttgaagcaaagggaaaccttcaagacataacc 6881082  T
Q  102 attcct 107  Q
    ||||||    
T  6881083 attcct 6881088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 6942400 - 6942428
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcag 30  Q
    |||||||||||||||||||||||||||||    
T  6942400 ttttgtaaagaaggaaggtgttgaggcag 6942428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 2 - 210
Target Start/End: Complemental strand, 9331 - 9123
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataaca 101  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||   |||||||||||| ||||||||||||||||||||||||||||||     
T  9331 ttttgtaaagaaggaaggtgttgtggcagagcccttttcaattcgggacaattggatatagaaaactcgttaagcaaaggaaactctccaaggcataacc 9232  T
Q  102 attcctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaag 201  Q
    ||||||||||||||||||||| | | |||  ||  ||| ||||||| |||||||||||||||||||| ||||| ||||| |||||||  | |||| ||||    
T  9231 attcctccaactcgttgcaataattgatccgcaaatttagtaaagaaggaagatgttgaggcaatacccttttgaatttagaacaataccatatagaaag 9132  T
Q  202 ctctttaag 210  Q
    |||||||||    
T  9131 ctctttaag 9123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 9197 - 8918
Alignment:
Q  1 attttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaactctccaaggcataac 100  Q
    |||| ||||||||||||| ||||||||||   ||||||| ||||  | |||||  | |||||||| |||||||||  || ||||| || |||| ||||||    
T  9197 atttagtaaagaaggaagatgttgaggcaatacccttttgaatttagaacaataccatatagaaagctctttaagagaaagaaacccttcaagacataac 9098  T
Q  101 aattcctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttgaggcaatactcttttcaatttggaacaatcacttatataaa 200  Q
     ||||||||||||| |||||| ||  |||  ||| |||||||||||| ||||||||||||||||     ||||||||||| | |||||    ||||||||    
T  9097 cattcctccaactctttgcaaccataaataatcaatttttgtaaagaaggaagatgttgaggcagggtgcttttcaatttaggacaattttctatataaa 8998  T
Q  201 gctctttaagcagaggaaaccttacacatatccattcctcccagttgaccatatccgcaaatctcaaatattcaagggac 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8997 gctctttaagcagaggaaaccttacacatatccattcctcccagttgaccatatccacaaatctcaaatattcaagggac 8918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1643 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 634 - 720
Alignment:
Q  2 ttttgtaaagaaggaaggtgttgaggcagag---cccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaac 85  Q
    ||||||||| |||||||||||||||||||||   ||||||  |||| |||||| |||||||||| || |||||||||||||||||||    
T  634 ttttgtaaaaaaggaaggtgttgaggcagagtggccctttctaatttgggacactttcttatagtaagctctttaagcaaaggaaac 720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1643; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 164
Target Start/End: Original strand, 602 - 661
Alignment:
Q  105 cctccaactcgttgcaatcactaatcttcagtttttgtaaagatggaagatgttgaggca 164  Q
    |||||| || |||||||||| |||| ||||||||||||||| | ||||| ||||||||||    
T  602 cctccatcttgttgcaatcagtaatattcagtttttgtaaaaaaggaaggtgttgaggca 661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0958 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0958
Description:

Target: scaffold0958; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 1357 - 1275
Alignment:
Q  3 tttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaaactctttaagcaaaggaaac 85  Q
    |||||||||||||||||||| |||| || ||||||||||||  | |||||| |||||||||||  | ||||||||||||||||    
T  1357 tttgtaaagaaggaaggtgtcgaggtagggcccttttcaatatgcgacaatatcttatagaaagatttttaagcaaaggaaac 1275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University