View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7011_low_12 (Length: 270)
Name: NF7011_low_12
Description: NF7011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7011_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 28 - 235
Target Start/End: Original strand, 23748070 - 23748274
Alignment:
| Q |
28 |
agtccagtatcagttaccctgaaataagagtcatatttcagtattgttactaaggattgacttgtaaatccaaagtaagattttcaaatgctaaatcaaa |
127 |
Q |
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| T |
23748070 |
agtccagtatcagttaccctgaaataagagtcatatt-cagtattgttgctaaggattgacttttaaatccaaagtgagattttcaaatgctaaatcaaa |
23748168 |
T |
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| Q |
128 |
catggcacattaagaaatttttcaaagtacctcacgttccagtagacggaaaatgtttttagctgaggacaacaactggttattgcttcaattcctgtat |
227 |
Q |
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| T |
23748169 |
cacgggtcattaagaa--ttttcaaagtacctcacgttccagtagacggaaaatgtttttagctgaggacaacaactagttattgcttcaattcctgtat |
23748266 |
T |
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| Q |
228 |
ccgatatt |
235 |
Q |
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|||||||| |
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| T |
23748267 |
ccgatatt |
23748274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 35 - 221
Target Start/End: Original strand, 23687147 - 23687333
Alignment:
| Q |
35 |
tatcagttaccctgaaataagagtcatatttcagtattgttactaaggattgacttgtaaatccaaagtaagattttcaaatgctaaatcaaacatggca |
134 |
Q |
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| T |
23687147 |
tatcagttatcctgtaataggactcatatttcagtattgttgctaaggattaacttttaaatccaaagtgaggttttcaactgcaaaatcaaacattgca |
23687246 |
T |
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| Q |
135 |
cattaagaaatttttcaaagtacctcacgttccagtagacggaaaatgtttttagctgaggacaacaactggttattgcttcaattc |
221 |
Q |
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| T |
23687247 |
catttagaaaaaattgaatgcacctcacattccagtagatggaacaggtttctagctgaggacaacaactggttattgcttcaattc |
23687333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 23743287 - 23743232
Alignment:
| Q |
164 |
ttccagtagacggaaaatgtttttagctgaggacaacaactggttattgcttcaat |
219 |
Q |
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| T |
23743287 |
ttccagtagatggaaaaggtttatagctgagaacaacaactggttattgcttcaat |
23743232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 23721338 - 23721392
Alignment:
| Q |
168 |
agtagacggaaaatgtttt-tagctgaggacaacaactggttattgcttcaattc |
221 |
Q |
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| T |
23721338 |
agtagatggaaaaagttttctagctgaggacaacaattggttattgcttcaattc |
23721392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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