View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7011_low_2 (Length: 575)

Name: NF7011_low_2
Description: NF7011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7011_low_2
NF7011_low_2
[»] chr1 (3 HSPs)
chr1 (13-575)||(24128103-24128665)
chr1 (13-268)||(24145865-24146123)
chr1 (382-575)||(24146435-24146629)
[»] chr7 (1 HSPs)
chr7 (80-267)||(43531338-43531525)


Alignment Details
Target: chr1 (Bit Score: 519; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 13 - 575
Target Start/End: Original strand, 24128103 - 24128665
Alignment:
Q  13 cagagaagaaaaagataatggtttctgtacctctagatgaagatttaaaggccaaagttgtttctgctaaaagacaatggggagcaagatgggatgaaca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24128103 cagagaagaaaaagataatggtttctgtacctctagatgaagatttaaaggccaaagttgtttctgctaaaagacaatggggagcaagatgggatgaaca 24128202  T
Q  113 attttccatacttttttggagaggaatcaaggaaaggaggcatgactattttagctggttaagaatcacacaagttttatccactgcaatcatcttagga 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24128203 attttccatacttttttggagaggaatcaaggaaaggaggcatgactattttagctggttaagaatcacacaagttttatccactgcaatcatcttagga 24128302  T
Q  213 ttactctggtggcaatccgatgctaagaacccaaaagatctgcaagatcaggtaaactatttctgttagaccgaaagaaccatagtggttataagcgctt 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24128303 ttactctggtggcaatccgatgctaagaacccaaaagatctgcaagatcaggtaaactatttctgttagaccgaaaaaaccatagtggttataagcgctt 24128402  T
Q  313 ttgcgtcgttcgcgaaaagaccttaagtgtttattgaataaaagtttacatataatcgcttaattaaaatgtttatccaaacaaagcctattcaagtaca 412  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24128403 ttgcgtcgttcgtgaaaagaccttaagtgtttattgaataaaagtttacatataatcgcttaattaaaatgtttatccaaacaaagcctattcaagtaca 24128502  T
Q  413 tatgataagaaaaaatcaactataaaggacctctttcaaacacagcctaagacatgagcatcttatgataaaatgttaattttttggtttcaggcaggat 512  Q
    |||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24128503 tatgataagacaaaatcaactataaatgagctctttcaaacacagcctaagacatgagcatcttatgataaaatgttaatgttttggtttcaggcaggat 24128602  T
Q  513 tacttttctttattggggtgttcgggggattctttccagtttttaccgccatatttacatttc 575  Q
    |||| |||||||||| ||||||| |||||||||||||||||||||| || |||||||||||||    
T  24128603 tactattctttattgcggtgttctggggattctttccagtttttacagcaatatttacatttc 24128665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 24145865 - 24146123
Alignment:
Q  13 cagagaagaaaaagataatggtttctgtacctctagatgaagatttaaaggccaaagt-tgtt--tctgctaaaagacaatggggagcaagatgggatga 109  Q
    ||||||||||||| ||||| ||||| || || | |||||||| |||||||  |||||| ||||  ||  | |||||||||||||||||||| ||||||||    
T  24145865 cagagaagaaaaaaataattgtttccgtgccacaagatgaagctttaaagatcaaagtatgttcatcaccaaaaagacaatggggagcaagttgggatga 24145964  T
Q  110 acaattttccatacttttttggagaggaatcaaggaaaggaggcatgactattttagctggttaagaatcacacaagttttatccactgcaatcatctta 209  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24145965 acaattttccatacttttttgcagaggaatcaaggaaaggaagcatgactactttagctggttaagaatcacacaagttttatccactgcaatcatctta 24146064  T
Q  210 ggattactctggtggcaatccgatgctaagaacccaaaagatctgcaagatcaggtaaa 268  Q
    |||| ||||||||||||||| |||||| | |||||||||||||||||||||||||||||    
T  24146065 ggatcactctggtggcaatcagatgctgaaaacccaaaagatctgcaagatcaggtaaa 24146123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 382 - 575
Target Start/End: Original strand, 24146435 - 24146629
Alignment:
Q  382 tgtttatccaaacaaagcctattcaagtacatatgataagaaaaaatcaactataaaggacctctttcaaacacagcctaagacatgagcatcttatgat 481  Q
    |||||||||||||| |||||||||||| || |||||||||  ||| | ||||||||| || ||||||||| ||||   ||||||| |||| ||| |   |    
T  24146435 tgtttatccaaacagagcctattcaaggacttatgataagctaaactaaactataaatgaactctttcaa-cacataataagacacgagcctctgaactt 24146533  T
Q  482 aaaatgttaattttt-tggttt-caggcaggattacttttctttattggggtgttcgggggattctttccagtttttaccgccatatttacatttc 575  Q
    || || | ||  ||| |||||| ||||||||| ||||||||||||||   |||||| ||||| || ||||||||||||| || |||||||||||||    
T  24146534 aacatataaacatttgtggtttgcaggcaggactacttttctttattactgtgttctggggactcattccagtttttacagcaatatttacatttc 24146629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 80 - 267
Target Start/End: Complemental strand, 43531525 - 43531338
Alignment:
Q  80 taaaagacaatggggagcaagatgggatgaacaattttccatacttttttggagaggaatcaaggaaaggaggcatgactattttagctggttaagaatc 179  Q
    ||||||||||||||||||||| |||  |||||||||||  ||| | ||||  |||||| |||| ||| |||| |||||||||||||||||||| ||||||    
T  43531525 taaaagacaatggggagcaagttggattgaacaatttttaatattgttttccagaggattcaaagaacggagacatgactattttagctggttgagaatc 43531426  T
Q  180 acacaagttttatccactgcaatcatcttaggattactctggtggcaatccgatgctaagaacccaaaagatctgcaagatcaggtaa 267  Q
    ||||||||| | ||||||||  ||||| | |||||||| ||||||||||| |||||||  |||||||| | ||| |||||||||||||    
T  43531425 acacaagttctttccactgctgtcatccttggattactatggtggcaatcagatgctagcaacccaaagggtcttcaagatcaggtaa 43531338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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