View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7011_low_20 (Length: 220)
Name: NF7011_low_20
Description: NF7011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7011_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 507668 - 507858
Alignment:
| Q |
17 |
agtgataacctacctgagatgagtatttgatcctagaatatcggtcaaaggaatatgaaatgcttctgaccaagataactgtttaatgcatgtagcagtt |
116 |
Q |
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| T |
507668 |
agtgataacctacctgagatgagtatttgatcctagaatatcggtcaaaggaatatgaaatgcttctgaccaagataactgtttaatgcatgtagcagtt |
507767 |
T |
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| Q |
117 |
ggtgttccccaacggtaactaccagcagagaagttcaaaaacttatcctcttttgttttcttatcaaatggttccttgaacaccttcttct |
207 |
Q |
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| T |
507768 |
ggtgttccccaacggtaactaccagcagagaagttcaaaaacttatcctcttttgttttcttatcaaatggttccttgaacaccttcttct |
507858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 63 - 187
Target Start/End: Original strand, 16703985 - 16704109
Alignment:
| Q |
63 |
aaaggaatatgaaatgcttctgaccaagataactgtttaatgcatgtagcagttggtgttccccaacggtaactaccagcagagaagttcaaaaacttat |
162 |
Q |
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| T |
16703985 |
aaagggatatgaaatgcctctgaccaagataactgtccaacacatgtggcagaaggtgttccccaacggtaactaccagaagaaaattgcaagaacttgt |
16704084 |
T |
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| Q |
163 |
cctcttttgttttcttatcaaatgg |
187 |
Q |
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| T |
16704085 |
cctctttggtctttttatcaaatgg |
16704109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 63 - 187
Target Start/End: Original strand, 17678221 - 17678345
Alignment:
| Q |
63 |
aaaggaatatgaaatgcttctgaccaagataactgtttaatgcatgtagcagttggtgttccccaacggtaactaccagcagagaagttcaaaaacttat |
162 |
Q |
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| T |
17678221 |
aaagggatatgaaatgcctctgaccaagataactgtccaacacatgtggcagaaggtgttccccaacggtaactaccagaagaaaattgcaagaacttgt |
17678320 |
T |
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| Q |
163 |
cctcttttgttttcttatcaaatgg |
187 |
Q |
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| T |
17678321 |
cctctttggtctttttatcaaatgg |
17678345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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