View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7011_low_3 (Length: 539)
Name: NF7011_low_3
Description: NF7011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7011_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 14 - 534
Target Start/End: Original strand, 4774362 - 4774883
Alignment:
| Q |
14 |
acttacgaagaattatatcaattttttatttggaagaaaataatagaataatttgacatttatacaagtaaattgtttatgatggtgctcgtgaatttac |
113 |
Q |
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| T |
4774362 |
acttacgaagaattatatcaattttttatttggaagaaaataatagaataatttgacatttatacaagtaaattgtttatgatggtgctcgtgaatttac |
4774461 |
T |
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| Q |
114 |
tttgctttcctttctaaataaatagaagtggaaaaagatccagttgtnnnnnnnntttatgataataaattaatgcgtgtaagcgtgtgaaattatgtga |
213 |
Q |
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| T |
4774462 |
tttgctttcctttctaaataaatagaagtggaaaaagatccagttgtaaataaattttatgataataaattaatgcgtgtaagcgtgtgaaattatgtga |
4774561 |
T |
|
| Q |
214 |
ttagtgttggcatatacgaatatgctgagaatcgtgagatcataagatgaatgagacatgtaagtcacgtaaaaaatatttcagtgcaaatatataaagt |
313 |
Q |
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| T |
4774562 |
ttagtgttggcatatacgaatatgctgagaatcgtgagatcataagatgaatgagacatgtaagtcacgtaaaaaatatttcagtgtaaatatataaagt |
4774661 |
T |
|
| Q |
314 |
gattcctctattttatttaacatattttcatagcatgtacgtgacagattgaagctggggaaggttgcaacggcaagtattctccaatggtcccaacaga |
413 |
Q |
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| T |
4774662 |
gattcctctattttatttaacatatttttatagcatgtacgtgacagattgaagctggggaaggttgcaacggcaagtattttccaatggtcccaacaga |
4774761 |
T |
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| Q |
414 |
-nnnnnnnnnnnatagaaactaactaattatctttacaatatctaaggatttgtagagagaaatgcatgatctcttataaactttttcttactgcacttc |
512 |
Q |
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| T |
4774762 |
ttttttttttttatagaaactaagtaattatctttacaatatctaaggatttgtagagagaaattcatgatctcttataaactttttcttactgcacttc |
4774861 |
T |
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| Q |
513 |
attgtgtcgaatattcttggac |
534 |
Q |
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| T |
4774862 |
attgtgtcgaatattattggac |
4774883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 269 - 401
Target Start/End: Complemental strand, 23169187 - 23169055
Alignment:
| Q |
269 |
acatgtaagtcacgtaaaaaatatttcagtgcaaatatataaagtgattcctctattttatttaacatattttcatagcatgtacgtgacagattgaagc |
368 |
Q |
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||||||||||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23169187 |
acatgtaagtcacataacaaatatttcactacaaatatataaagtgattcctctattttatttaatatattttcatagcatgtacgtgacagattgaagc |
23169088 |
T |
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| Q |
369 |
tggggaaggttgcaacggcaagtattctccaat |
401 |
Q |
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| T |
23169087 |
tggggaaggttgcaacgacaagtaatctccaat |
23169055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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