View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7011_low_6 (Length: 383)
Name: NF7011_low_6
Description: NF7011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7011_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 14 - 366
Target Start/End: Original strand, 28782273 - 28782624
Alignment:
| Q |
14 |
cagagacaatggaggcggattggttggtctcctccacccctaaatgtcgttaaggtcaatatggagggatcatctgttctaatcgaagtttcattcaagg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28782273 |
cagagacaatggaggcggattggttggtctcctccacccctacatgttgttaaggtcaatatggagggatcatctgttctaatcgaagtttcattcaagg |
28782372 |
T |
|
| Q |
114 |
atatttctgcaacctgggagcttgtactgctttcattgccaagcttcgtgctctcttatggtagtaagtgtgctggagagcttaatcttcatgcagttat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
28782373 |
atatttctgcaacctgggagcttgtactgctttcaatgccgagcttcgtgctctcttatggtagtaagtgtgctggagagcttaatcttcctgccgttat |
28782472 |
T |
|
| Q |
214 |
ttttgtactgattcagcggtggttgctcttggatggtttagtccaaaacgacttcctccttactttttaaatttttccttgacgagatccatgccttact |
313 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||| | ||||||||||| |
|
|
| T |
28782473 |
ttttgt-ctgattcagcgatggttgctcttggatggttcagtccaaaacgacatcctccttactttttaaatttctccttgacgagtttcatgccttact |
28782571 |
T |
|
| Q |
314 |
caactcttcagcttggcctttctctttccatcatatctatcgtgaagtgaatg |
366 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||| ||||||| ||||| |
|
|
| T |
28782572 |
caactcttcagcttgggatttctctatccatcatatctaacgtgaagcgaatg |
28782624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 359
Target Start/End: Original strand, 28789262 - 28789603
Alignment:
| Q |
19 |
acaatggaggcggattggttggtctcctccacccctaaatgtcgttaaggtcaatatggagggatcatctgttctaatcgaagtttcattcaaggatatt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
28789262 |
acaatggaggcggattggttggtctcctcgacccccaaatgttgttaaggtcaatatggatggatcatctgttctaatggaagtttcattcaaggatttt |
28789361 |
T |
|
| Q |
119 |
tctgcaacctgggagcttgtactgctttcattgccaagcttcgtgctct-ctta-tggtagtaagtgtgctggagagcttaatcttcatgcagttatttt |
216 |
Q |
| |
|
|||||||||| ||||| |||| ||| || | || |||||||||||| |||| |||||||||||||| | |||||||||| || | |||| ||||| |
|
|
| T |
28789362 |
tctgcaacctaggagcatgtatggctctctattccgtgcttcgtgctctccttattggtagtaagtgtggccgtgagcttaatcctcgtacagtaatttt |
28789461 |
T |
|
| Q |
217 |
t-gtactgattcagcggtggttgctcttggatggtttagtccaaaacgacttcctccttactttttaaatttttccttgacgagatccatgccttactca |
315 |
Q |
| |
|
| | ||||||||||||||||| | || ||||||| ||| || ||||||||||||||||||||||| | |||||||| |||||||||||||||||| |
|
|
| T |
28789462 |
tagaactgattcagcggtggt--ccctcagatggttcgacccagaatgacttcctccttactttttaaatctctccttgacaagatccatgccttactca |
28789559 |
T |
|
| Q |
316 |
actcttcagcttggcctttctctttccatcatatctatcgtgaa |
359 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28789560 |
actcttcagcttggcctttctctatccatcatatctatcgtgaa |
28789603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University