View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7011_low_9 (Length: 283)
Name: NF7011_low_9
Description: NF7011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7011_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 257
Target Start/End: Original strand, 2600048 - 2600295
Alignment:
| Q |
10 |
ggtgttgtagaaggtggtggaggacaagcctttggtgtttttgaaggtggaggtggacttggtggagttggtttgcatgaaccacaagcatttgaaaatg |
109 |
Q |
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| T |
2600048 |
ggtgttgtagaaggtggtggaggacaagcctttggtgtttttgaaggtggaggtggacttggtggagttggtttgcatgaaccacaagcatttgaaaatg |
2600147 |
T |
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| Q |
110 |
ttgaataagaaaggagagaaaacaatataattagggcactaagcttgttggaagccattcttaagaaatgtgtacactaattgtttttgtatattttgat |
209 |
Q |
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| T |
2600148 |
ttgaataagcaaggagagaaaataatataattagtgcactatgcttgttggaagccattcttaagaaatgtgtacactaattgtttttgtatgttttgat |
2600247 |
T |
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| Q |
210 |
gttgaatgaaagaatgagaacttgaaccattttataggcaaagttttg |
257 |
Q |
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| T |
2600248 |
gttgaatgatagaatgagaacttgacccattttataggcaaagttttg |
2600295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 25 - 264
Target Start/End: Original strand, 2592279 - 2592527
Alignment:
| Q |
25 |
ggtggaggacaagcctttggtgtttttgaaggtggaggtggacttggtggagttggtttgcatgaaccacaagcatttgaaaatgttgaataagaaagga |
124 |
Q |
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| T |
2592279 |
ggtggagggctagccttaggtgttgtagaaggtggtggaggacttgttggagttggtttgcatgaaccacaagcatgtgaaaatgttgaataagaaagga |
2592378 |
T |
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| Q |
125 |
gagaaaacaatataattagggcactaagcttgttggaagccattcttaagaaatgtgtacactaattgt---------ttttgtatattttgatgttgaa |
215 |
Q |
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| T |
2592379 |
gagaaaataatataattagtgcactaagcttgttggaagccattcttaagaaatgtgtacactaattgtttttgtatgttttgtatgttttgatgttgaa |
2592478 |
T |
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| Q |
216 |
tgaaagaatgagaacttgaaccattttataggcaaagttttgaggttca |
264 |
Q |
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| T |
2592479 |
tgaaagaatgagaacttgaaccattttataggcaaagttttgaggttca |
2592527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 2578686 - 2578927
Alignment:
| Q |
13 |
gttgtagaaggtggtggaggacaagcctttggtgtttttgaaggtggaggtggacttggtggagttggtttgcatgaaccacaagcatttgaaaatgttg |
112 |
Q |
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| T |
2578686 |
gttgttgaaggtggtggaggacaagcctttggtgtttttgaaggtggaggaggactaattggagttggtttgcatgaagcgcaatcatgtgaaaatgttg |
2578785 |
T |
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| Q |
113 |
aataagaaaggagagaaaacaatataattagggcactaagcttgttggaagccattcttaagaaatgtgtacacta--attgtttttgtatattttgatg |
210 |
Q |
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| T |
2578786 |
aatgagcaaagagagaaaatattataattagtgcactaagcttgttggaagccattcttaagaaatgtgtgtactaatattgtttttgtatgttttgatg |
2578885 |
T |
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| Q |
211 |
ttgaatgaaagaatga-gaacttgaaccattttataggcaaa |
251 |
Q |
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| T |
2578886 |
ttgaatgaaagaatgatcaacttggccgattttataggcaaa |
2578927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 72 - 216
Target Start/End: Original strand, 2608607 - 2608748
Alignment:
| Q |
72 |
tggagttggtttgcatgaaccacaagcatttgaaaatgttgaataagaaaggagagaaaacaatataattagggcactaagcttgttggaagccattctt |
171 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2608607 |
tggagttggtttgcatgaaccacaagcatgtgaaaatgttgaataagcaaggagagaaaacaatataattagggcactaagcttgttggaagccattgtt |
2608706 |
T |
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| Q |
172 |
aagaaatgtgtacactaattgtttttgtatattttgatgttgaat |
216 |
Q |
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| T |
2608707 |
aagaaa--tgtacgctaa-tgcttttgtgtgttttgatgttgaat |
2608748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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