View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7012_high_2 (Length: 323)
Name: NF7012_high_2
Description: NF7012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7012_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 47280214 - 47279921
Alignment:
| Q |
18 |
cagaatatacttcggggaatgccaatgtccatatggtttgatcacttgcaaaacagcaaggatatccagacaaattatttcccctcaagtgaatgtttta |
117 |
Q |
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| T |
47280214 |
cagaatatacttcggggaacgccaatgtccatatggtttgatcacttgcaaaacagcaaggatatccagacaaattatttcccctcaagtgaatgtttta |
47280115 |
T |
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| Q |
118 |
gacagatagctattcttccttcagatgacaaggcttctttgtgattcctagctatgagcatgtcctcattaggttctaagattttgcatttttcttccac |
217 |
Q |
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| T |
47280114 |
gacagatagctattcttccttcagatgacaaggcttctttgtgattcctagctatgagcatgtcctcattaggttctaagattttgcatttttcttccac |
47280015 |
T |
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| Q |
218 |
aaattagattgctcttctaggtttgagagggaaattaaatgttttctccataaataatatttgaagaccttgttctgttttaatatttactcat |
311 |
Q |
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| T |
47280014 |
aaattagattgctcttctaggtttgagagggaaattaaatgttttctccataaataatatttgaagaccttgttctgttttaatatttactcat |
47279921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 49059933 - 49059873
Alignment:
| Q |
18 |
cagaatatacttcggggaatgccaatgtccatatggtttgatcacttgcaaaacagcaagg |
78 |
Q |
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| T |
49059933 |
cagaatattcttcagggaatgccaatgtccatagggtttgatcacttgcaaaacagcaagg |
49059873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 81 - 158
Target Start/End: Complemental strand, 49059576 - 49059499
Alignment:
| Q |
81 |
atccagacaaattatttcccctcaagtgaatgttttagacagatagctattcttccttcagatgacaaggcttctttg |
158 |
Q |
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| T |
49059576 |
atccaaacaaattctttctcttcaagtgaatgttttagacagacagctgttcctccttcagataacatggcttctttg |
49059499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 267
Target Start/End: Complemental strand, 47285831 - 47285733
Alignment:
| Q |
165 |
ctagctatgagcatgtcctcattaggttctaagattttgcatttttcttccacaaattagattgctcttctaggtttgagagggaaattaaatgttttct |
264 |
Q |
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| T |
47285831 |
ctagccatgagcatgtccttattcggttcctagcttttgcaattgtcttccacaatttggactgctcttcta----tgagagggaaatgacatgtgttct |
47285736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 120
Target Start/End: Complemental strand, 16515487 - 16515448
Alignment:
| Q |
81 |
atccagacaaattatttcccctcaagtgaatgttttagac |
120 |
Q |
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| T |
16515487 |
atccagacaaattatttcccttcaagtgaatgttttagac |
16515448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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