View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7012_low_1 (Length: 272)
Name: NF7012_low_1
Description: NF7012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7012_low_1 |
 | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
| [»] scaffold0133 (2 HSPs) |
| | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0256 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 9984 - 9743
Alignment:
| Q |
9 |
aagaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggatgaatgttcaataacct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9984 |
aagaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggatgaatgttcaataacct |
9885 |
T |
|
| Q |
109 |
taaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| | |
|
|
| T |
9884 |
taaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctcgtcgcaacattggaaagaggatgaaggagattgctaaaga |
9785 |
T |
|
| Q |
209 |
gattcatgatattgctgaagaaaggatgaagttcggattaca |
250 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9784 |
gattgatgatattgctgaagaaaggatgaagttcggattaca |
9743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 13689 - 13448
Alignment:
| Q |
9 |
aagaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggatgaatgttcaataacct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13689 |
aagaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgattgatgctgcttatgtgattgatgatatattggatgaatgttcaataacct |
13590 |
T |
|
| Q |
109 |
taaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaa |
208 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13589 |
taagagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctcgtcgcaacattggaaagaggatgaaggaggttgctaaaaa |
13490 |
T |
|
| Q |
209 |
gattcatgatattgctgaagaaaggatgaagttcggattaca |
250 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13489 |
gatcgatgatattgctgaagaaaggatgaagttcggattaca |
13448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 9341 - 9097
Alignment:
| Q |
9 |
aagaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggatgaatgttcaataacct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9341 |
aagaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggatgaatgttcaataacct |
9242 |
T |
|
| Q |
109 |
taaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaa |
208 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||| | |
|
|
| T |
9241 |
taaaagcacatggtaacaacaagcggatcactcgtttccatcctatgaagattttggttcgtcgcaacattggaaagaggatgaaggagattgctaaaga |
9142 |
T |
|
| Q |
209 |
gattcatgatattgctgaagaaaggatgaagttcggattacatgt |
253 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9141 |
gatcgacgatattgctgaagaaaggatgaagttcggattacatgt |
9097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 16781939 - 16781701
Alignment:
| Q |
9 |
aagaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggatgaatgttcaataacct |
108 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16781939 |
aagaagcaaataacaaatgatgctgtgaaagagtggttacagcaactgcgtgatgctgcttatgtgcttgatgatatattggacgaatgttcaataacct |
16781840 |
T |
|
| Q |
109 |
taaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| | |
|
|
| T |
16781839 |
taaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctcgtcgcaacattggaaagaggatgaaggagattgctaaaga |
16781740 |
T |
|
| Q |
209 |
gattcatgatattgctgaagaaaggatgaagttcggatt |
247 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
16781739 |
gatcgatgatattgctgaagaaaggatgaagttcggatt |
16781701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 16867329 - 16867567
Alignment:
| Q |
9 |
aagaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggatgaatgttcaataacct |
108 |
Q |
| |
|
||||||||||||||||||||| |||| | | ||||| || ||||| |||| ||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
16867329 |
aagaagcaaataacaaacgatcctgtgaggaactggctgcaaaaactgggtgacgctgcttatgtacttgatgatatattggatgaatgttcaataactt |
16867428 |
T |
|
| Q |
109 |
taaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaa |
208 |
Q |
| |
|
|||||| ||||| | ||||||| | |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16867429 |
caaaagcgcatggaggcaacaagtgcatcactagtttccatcctatgaagattttggctcgtcgcaacattggaaagaggatgaaggaggttgctaaaag |
16867528 |
T |
|
| Q |
209 |
gattcatgatattgctgaagaaaggatgaagttcggatt |
247 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||| ||||| |
|
|
| T |
16867529 |
gattgatgatattgctgaagaaaggatcaagtttggatt |
16867567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 16658846 - 16658608
Alignment:
| Q |
9 |
aagaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggatgaatgttcaataacct |
108 |
Q |
| |
|
||||||||||||||||||||| ||| | | ||||| || ||||| |||| ||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
16658846 |
aagaagcaaataacaaacgatcttgtgaggaactggctgcaaaaactgggtgacgctgcttatgtacttgatgatatattggatgaatgttcaataactt |
16658747 |
T |
|
| Q |
109 |
taaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaa |
208 |
Q |
| |
|
|||||||||||| | ||||||| | |||||| |||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
16658746 |
caaaagcacatggaggcaacaagtgcatcactagttttcatcctatgaagattttggctcgtcgtaacattggaaagaggatgaaggaggttgctaaaag |
16658647 |
T |
|
| Q |
209 |
gattcatgatattgctgaagaaaggatgaagttcggatt |
247 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||| ||||| |
|
|
| T |
16658646 |
gattgatgatattgctgaagaaaggatcaagtttggatt |
16658608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 16838518 - 16838280
Alignment:
| Q |
9 |
aagaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggatgaatgttcaataacct |
108 |
Q |
| |
|
|||||||| ||||||| | ||| ||| ||| | ||||| ||| || || |||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
16838518 |
aagaagcagataacaagcaatgttgtgaaacaatggctgcagaaattgggtgatgctgcttatgtacttgatgatatattggatgaatgttcaataactt |
16838419 |
T |
|
| Q |
109 |
taaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaa |
208 |
Q |
| |
|
||||||||||| | ||||||| | ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16838418 |
caaaagcacatgaaggcaacaagtgcatcacccgtttccatccaatgaagattttggctcgtcgcaacattggaaagaggatgaaggaggttgctaaaag |
16838319 |
T |
|
| Q |
209 |
gattcatgatattgctgaagaaaggatgaagttcggatt |
247 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||| ||||| |
|
|
| T |
16838318 |
gattgatgatattgctgaagaaaggaaaaagtttggatt |
16838280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 16798006 - 16797768
Alignment:
| Q |
9 |
aagaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggatgaatgttcaataacct |
108 |
Q |
| |
|
|||||||| ||||||| ||||| ||| || | ||||| ||| || || |||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
16798006 |
aagaagcagataacaagcgatgttgtgcaaaaatggctgcagaaattgggtgatgctgcttatgtacttgatgatatattggatgaatgttcaataactt |
16797907 |
T |
|
| Q |
109 |
taaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaa |
208 |
Q |
| |
|
||||||||||| | ||||||| | ||||| ||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16797906 |
caaaagcacatgaaggcaacaagtgcatcacccgttttcatccaatgaaaattttggctcgtcgcaacattggaaagaggatgaaggaggttgctaaaag |
16797807 |
T |
|
| Q |
209 |
gattcatgatattgctgaagaaaggatgaagttcggatt |
247 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||| ||||| |
|
|
| T |
16797806 |
gattgatgatattgctgaagaaaggaaaaagtttggatt |
16797768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 16988285 - 16988056
Alignment:
| Q |
9 |
aagaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggatgaatgttcaataacct |
108 |
Q |
| |
|
|||||||||||||||| | ||| ||| ||| | ||||| ||| ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
16988285 |
aagaagcaaataacaagcaatgttgtgaaacaatggctgcagaaactgtctgatgctgcttatgtacttgatgatatattggatgaatgctcaataacct |
16988186 |
T |
|
| Q |
109 |
taaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaa |
208 |
Q |
| |
|
|||||||||||| ||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
16988185 |
caaaagcacatggagacaaca---------ctagtttccatcctatgaagattttggctcatcgcaacattgggaagaggatgaagaaagttgctaaaaa |
16988095 |
T |
|
| Q |
209 |
gattcatgatattgctgaagaaaggatgaagttcggatt |
247 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||| ||||| |
|
|
| T |
16988094 |
gattgatgatattgctgaagaaaggatcaagtttggatt |
16988056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 9 - 235
Target Start/End: Complemental strand, 17070343 - 17070117
Alignment:
| Q |
9 |
aagaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggatgaatgttcaataacct |
108 |
Q |
| |
|
|||||||| ||||||| ||||| ||| ||| | ||||| ||| || || |||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
17070343 |
aagaagcagataacaagcgatgttgtgaaacaatggctgcagaaattgggtgatgctgcttatgtacttgatgatatattggatgaatgttcaataactt |
17070244 |
T |
|
| Q |
109 |
taaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaa |
208 |
Q |
| |
|
||||||||||| | ||||||| | ||||| ||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17070243 |
caaaagcacatgaaggcaacaagtgcatcacccgtttccatccaatgaagattttggctcatcgcaacattggaaagaggatgaaggaggttgctaaaag |
17070144 |
T |
|
| Q |
209 |
gattcatgatattgctgaagaaaggat |
235 |
Q |
| |
|
|||| | ||||||||| |||||||||| |
|
|
| T |
17070143 |
gattgacgatattgctaaagaaaggat |
17070117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 18872509 - 18872749
Alignment:
| Q |
10 |
agaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggatgaatgttcaataacctt |
109 |
Q |
| |
|
|||||||| |||||| | || ||| ||||| ||||| ||| | ||| ||||| ||| ||||| |||||||||||||||||||| ||| ||||||| | |
|
|
| T |
18872509 |
agaagcaactaacaagccgtgttgtgaaagattggctgcagaagctgactgatgttgcctatgttcttgatgatatattggatgattgtacaataacatc |
18872608 |
T |
|
| Q |
110 |
aaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaag |
209 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| ||||||||||||| |||||||||||||||||| | ||||| ||||||||||||||||||||||||||| |
|
|
| T |
18872609 |
aaaagcacatggagacaacaagtggatcacccgtttccatcctaagaagattttggctcgtcgggatattggaaagaggatgaaggaggttgctaaaaag |
18872708 |
T |
|
| Q |
210 |
attcatgatattgctgaagaaaggatgaagttcggattaca |
250 |
Q |
| |
|
||| ||| |||||||||||||||||| ||||| |||||||| |
|
|
| T |
18872709 |
attgatgttattgctgaagaaaggatcaagtttggattaca |
18872749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 247
Target Start/End: Original strand, 18793946 - 18794183
Alignment:
| Q |
10 |
agaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggatgaatgttcaataacctt |
109 |
Q |
| |
|
||||||||||||||| | || ||| ||||| ||||| ||| | || ||||| ||| ||||| |||||||||||||||||||| ||| ||||||| | |
|
|
| T |
18793946 |
agaagcaaataacaagccgtgttgtgaaagattggctgcagaagctaactgatgttgcctatgttcttgatgatatattggatgattgtacaataacatc |
18794045 |
T |
|
| Q |
110 |
aaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaag |
209 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| ||||| ||||||| |||||||||||||||| | || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
18794046 |
aaaagcacatggagacaacaagtggatcacccgtttacatcctaagaagattttggctcgtaggaatattggaaagaggatgaaggaggttgctaaaaag |
18794145 |
T |
|
| Q |
210 |
attcatgatattgctgaagaaaggatgaagttcggatt |
247 |
Q |
| |
|
||| ||| |||||||||||||||||| ||||| ||||| |
|
|
| T |
18794146 |
attgatgttattgctgaagaaaggatcaagtttggatt |
18794183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 10 - 235
Target Start/End: Original strand, 18587027 - 18587252
Alignment:
| Q |
10 |
agaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggatgaatgttcaataacctt |
109 |
Q |
| |
|
||||||||||||||| | || ||| ||||| ||||| ||| | ||| ||||| ||||||||| ||||| |||||||||||||| ||| |||||| | |
|
|
| T |
18587027 |
agaagcaaataacaagccgtgttgtgaaagattggctgcagaagctgactgatgttgcttatgttcttgacgatatattggatgattgtacaataaaatc |
18587126 |
T |
|
| Q |
110 |
aaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaag |
209 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| ||||||||||||| || ||||||||||||| | | ||||| ||||||||||||||||||||||||||| |
|
|
| T |
18587127 |
aaaagcacatggagacaacaagtggatcacccgtttccatcctaagatgattttggctcgtagggatattggaaagaggatgaaggaggttgctaaaaag |
18587226 |
T |
|
| Q |
210 |
attcatgatattgctgaagaaaggat |
235 |
Q |
| |
|
||| ||| |||||||||||||||||| |
|
|
| T |
18587227 |
attgatgttattgctgaagaaaggat |
18587252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 18870032 - 18870272
Alignment:
| Q |
10 |
agaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggatgaatgttcaataacctt |
109 |
Q |
| |
|
||||||||||||| | | || ||| ||||| ||||| ||| | ||| ||||| ||||||||| |||||||||||||||||||| ||| |||||| | |
|
|
| T |
18870032 |
agaagcaaataacgagccgtgttgtgaaagattggctgcagaagctgactgatgttgcttatgttcttgatgatatattggatgattgtacaataaaatc |
18870131 |
T |
|
| Q |
110 |
aaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaag |
209 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| |||||||||||| || ||||||||||||| | | ||||| ||||||||||||||||||||||||||| |
|
|
| T |
18870132 |
aaaagcacatggagacaacaagtggatcaccagtttccatcctaagatgattttggctcgtagggatattggaaagaggatgaaggaggttgctaaaaag |
18870231 |
T |
|
| Q |
210 |
attcatgatattgctgaagaaaggatgaagttcggattaca |
250 |
Q |
| |
|
||| ||| |||||||||||||||||| || || |||||||| |
|
|
| T |
18870232 |
attgatgttattgctgaagaaaggatcaaattaggattaca |
18870272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 84 - 247
Target Start/End: Original strand, 18805589 - 18805752
Alignment:
| Q |
84 |
atattggatgaatgttcaataaccttaaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctcgtcgcaacattggga |
183 |
Q |
| |
|
||||||||||| ||| ||||||| | |||||||||||| ||||||||| ||||||| ||||||||||||| |||||||||||||||||| | ||||| | |
|
|
| T |
18805589 |
atattggatgattgtacaataacatcaaaagcacatggagacaacaagtggatcacccgtttccatcctaagaagattttggctcgtcgggatattggaa |
18805688 |
T |
|
| Q |
184 |
agaggatgaaggaggttgctaaaaagattcatgatattgctgaagaaaggatgaagttcggatt |
247 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||| ||||| |
|
|
| T |
18805689 |
agaggatgaaggaggttgctaaaaagattgatgttattgctgaagaaaggatcaagtttggatt |
18805752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 16788752 - 16788571
Alignment:
| Q |
59 |
tgatgctgcttatgtgcttgatgatatattggatgaatgttcaataaccttaaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaag |
158 |
Q |
| |
|
|||||||||| |||| ||||||||| ||||||| |||||||||||||| | |||||||||||| ||||||||| | ||||| ||||||| ||||| |||| |
|
|
| T |
16788752 |
tgatgctgctcatgttcttgatgatttattggacgaatgttcaataacatcaaaagcacatggagacaacaagtgcatcacccgtttccttcctaagaag |
16788653 |
T |
|
| Q |
159 |
attttggctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaagattcatgatattgctgaagaaaggatgaagt |
240 |
Q |
| |
|
|||||||||| || || |||| ||||||||||||| |||||||||||||||| | | ||||||| |||| |||||||||| |
|
|
| T |
16788652 |
attttggctcagcgtgacgttggaaagaggatgaaggcggttgctaaaaagattgacgttattgctaaagacaggatgaagt |
16788571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 250
Target Start/End: Complemental strand, 16844500 - 16844426
Alignment:
| Q |
176 |
cattgggaagaggatgaaggaggttgctaaaaagattcatgatattgctgaagaaaggatgaagttcggattaca |
250 |
Q |
| |
|
|||||| |||| |||||| ||||| ||| |||||||| ||| ||||||||||||||| || ||||| |||||||| |
|
|
| T |
16844500 |
cattggaaagaagatgaaagaggtagctgaaaagattgatgctattgctgaagaaagaatcaagtttggattaca |
16844426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 38938681 - 38938921
Alignment:
| Q |
10 |
agaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggatgaatgttcaataacctt |
109 |
Q |
| |
|
|||||||||| |||| | ||| ||| ||||| ||||| ||| || ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38938681 |
agaagcaaattacaagccatgttgtgaaagactggctgcagaaattgcgtgatgttgcttatgtacttgatgatatattggatgaatgttcaataacctt |
38938780 |
T |
|
| Q |
110 |
aaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaag |
209 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38938781 |
aaaagcacatggcgacaacaagtggatcactcgtttccatcctctgaagattttggctcgtcgcaacattggaaagaggatgaaggaggttgctaaaaag |
38938880 |
T |
|
| Q |
210 |
attcatgatattgctgaagaaaggatgaagttcggattaca |
250 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38938881 |
atcgatgatattgctgaagaaaggatgaagttcggattaca |
38938921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 7052586 - 7052825
Alignment:
| Q |
11 |
gaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggatgaatgttcaataacctta |
110 |
Q |
| |
|
||||||||| |||| | ||||||| ||||| ||||| ||| | ||| |||||||||| |||| ||||||||||||||||| |||||||||||||| | | |
|
|
| T |
7052586 |
gaagcaaattacaagccatgctgtaaaagattggctgcagaagctggctgatgctgctcatgttcttgatgatatattggacgaatgttcaataacatca |
7052685 |
T |
|
| Q |
111 |
aaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaaga |
210 |
Q |
| |
|
||| | ||| ||||||||| ||||||| ||||||||||||| ||||||||||||||| || ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
7052686 |
aaaccctgtggagacaacaagtggatcacccgtttccatcctaagaagattttggctcggcgtgacattggaaagaggatgaaagaggttgctaaaaaga |
7052785 |
T |
|
| Q |
211 |
ttcatgatattgctgaagaaaggatgaagttcggattaca |
250 |
Q |
| |
|
|| ||| |||||||||||||||||| ||||| |||||||| |
|
|
| T |
7052786 |
ttgatgttattgctgaagaaaggatcaagtttggattaca |
7052825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 12 - 234
Target Start/End: Complemental strand, 38321 - 38099
Alignment:
| Q |
12 |
aagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggatgaatgttcaataaccttaa |
111 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38321 |
aagcaaataacaaacgatgccgtgaaagagtggctacagcaactcggtgattctgcttatgtacttgatgatatattggatgaatgttcaataaccttaa |
38222 |
T |
|
| Q |
112 |
aagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaagat |
211 |
Q |
| |
|
|| |||| || ||| ||||| | |||||| ||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
38221 |
aaccacacggagacgacaagtgcatcactagtttccatcctgtgaagattttggcttgtcgcaacattggaaagaggatgaaggaggttgctaaaaggat |
38122 |
T |
|
| Q |
212 |
tcatgatattgctgaagaaagga |
234 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
38121 |
tgatgatattgctgaagaaagga |
38099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 5515 - 5275
Alignment:
| Q |
10 |
agaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggatgaatgttcaataacctt |
109 |
Q |
| |
|
||||||||||||||| | || ||| ||||| ||||| ||| | ||| ||||| ||||||||| ||||| |||||||||||||| ||| |||||| | |
|
|
| T |
5515 |
agaagcaaataacaagccgtgttgtgaaagattggctgcagaagctgactgatgttgcttatgttcttgacgatatattggatgattgtacaataaaatc |
5416 |
T |
|
| Q |
110 |
aaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaag |
209 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| ||||||||||||| || ||||||||||||| | | ||||| ||||||||||||||||||||||||||| |
|
|
| T |
5415 |
aaaagcacatggagacaacaagtggatcacccgtttccatcctaagatgattttggctcgtagggatattggaaagaggatgaaggaggttgctaaaaag |
5316 |
T |
|
| Q |
210 |
attcatgatattgctgaagaaaggatgaagttcggattaca |
250 |
Q |
| |
|
||| ||| |||||||||||||||||| ||||| |||||||| |
|
|
| T |
5315 |
attgatgttattgctgaagaaaggatcaagtttggattaca |
5275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 10 - 247
Target Start/End: Complemental strand, 10195 - 9958
Alignment:
| Q |
10 |
agaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggatgaatgttcaataacctt |
109 |
Q |
| |
|
||||||||||||||| | || ||| ||||| ||||| ||| | || ||||| ||| ||||| |||||||||||||||||||| ||| ||||||| | |
|
|
| T |
10195 |
agaagcaaataacaagccgtgttgtgaaagattggctgcagaagctaactgatgttgcctatgttcttgatgatatattggatgattgtacaataacatc |
10096 |
T |
|
| Q |
110 |
aaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaag |
209 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| ||||| ||||||| |||||||||||||||| | | ||||| ||||||||||||||||||||||||||| |
|
|
| T |
10095 |
aaaagcacatggagacaacaagtggatcacccgttttcatcctaagaagattttggctcgttggcatattggaaagaggatgaaggaggttgctaaaaag |
9996 |
T |
|
| Q |
210 |
attcatgatattgctgaagaaaggatgaagttcggatt |
247 |
Q |
| |
|
||| ||| |||||||||||||||||| ||||| ||||| |
|
|
| T |
9995 |
attgatgttattgctgaagaaaggatcaagtttggatt |
9958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 75 - 253
Target Start/End: Complemental strand, 13378868 - 13378687
Alignment:
| Q |
75 |
cttgatgatatattggatgaatgttcaataaccttaaaagcacatgg---cgacaacaagcggatcactcgtttccatcctatgaagattttggctcgtc |
171 |
Q |
| |
|
|||||||||||||| || |||| ||| |||| | ||||||||||| |||| ||||| ||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
13378868 |
cttgatgatatattagacgaatattcgataagatccaaagcacatggagacgacgacaagtggatcactcgtttccatcctaagaagattttggctcgcc |
13378769 |
T |
|
| Q |
172 |
gcaacattgggaagaggatgaaggaggttgctaaaaagattcatgatattgctgaagaaaggatgaagttcggattacatgt |
253 |
Q |
| |
|
| ||||| ||||||||||| |||||||||||||||||| ||| |||||||||||| |||| ||||| ||||||||||| |
|
|
| T |
13378768 |
gaggtattggaaagaggatgaaagaggttgctaaaaagattgatgttattgctgaagaccggatcaagtttggattacatgt |
13378687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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