View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7012_low_3 (Length: 341)
Name: NF7012_low_3
Description: NF7012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7012_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 50654711 - 50655037
Alignment:
| Q |
1 |
aatgggtaaacaggaattcaagacaacaatttatgcaaccaaataaaatccaaaacctatagttcaacaaaaaccattaacccgaactaaggatctgtta |
100 |
Q |
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| T |
50654711 |
aatgggtgaacaggaattcacgacaacaatttatgcaaccaaataaaatccaaaacctatagttcaacaaaaaccaataacccgaactaaggatctgtta |
50654810 |
T |
|
| Q |
101 |
gtccacataaaattggaatctgtaattaagaagattgtatcatttgagagcaaaccaatcagttcaagtgaggaaacttatactatgctaaaaagactaa |
200 |
Q |
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| T |
50654811 |
gtccacataaaattggaatctgtaattaagaagattgtatcatttgagagcaaaccaattagttcaagtgaggaaaattatactatgctaaaaagactaa |
50654910 |
T |
|
| Q |
201 |
tgaatgttacttatgaattgcaaaatgattcagtcactatgatattgattttccctcaacnnnnnnnnnnnnnnnnctaagatattgatttctatctttc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
50654911 |
tgaatgttacttatgaattgcaaaatgattcagtcactatgatattgattttccctcaa-------aaaaaaaaaactaagatattgatttctatctttc |
50655003 |
T |
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| Q |
301 |
tcagtc--atgaatattgggatatgattgatgat |
332 |
Q |
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||| || |||||||||||||||||||||||||| |
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| T |
50655004 |
tcaatcatatgaatattgggatatgattgatgat |
50655037 |
T |
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