View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7012_low_4 (Length: 325)
Name: NF7012_low_4
Description: NF7012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7012_low_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 43170534 - 43170210
Alignment:
| Q |
1 |
ccaccaccataacaaccatgaaccacacaacacttcttctctttctcttcctcctttcaccttccttagtcctcacaacaaccaacccagacgaccttaa |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43170534 |
ccaccaccataacaaccatgtaccacacaacacttcttctctttctcttcctcctttcaccttccttagtcctcacaacaaccaacccagacgaccttaa |
43170435 |
T |
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| Q |
101 |
aatcctcaacgacttcaaagacaacctagacaacccagacatcctacaatggcccaaaaacaacaacgacccatgtggtccacctgcttggaaattcatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43170434 |
aatcctcaacgacttcaaagacaacctagacaacccagacatcctacaatggcccaaaaacaacaacgacccatgtggtccacctgcttggaaattcatc |
43170335 |
T |
|
| Q |
201 |
ttctgcgacggtgatagagtttcacagattcaaaccaaaaacttgaacctttctggaactttacctcaaaatctcaacctactaacccatctcttcaacc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43170334 |
ttctgcgacggtgatagagtttcacagattcaaaccaaaaacttgaacctttctggaactttacctcaaaatctcaaccaactaacccatctcttcaact |
43170235 |
T |
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| Q |
301 |
tgggtcttcaaaacaacaaacttaa |
325 |
Q |
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||||||||||||||||||||||||| |
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| T |
43170234 |
tgggtcttcaaaacaacaaacttaa |
43170210 |
T |
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