View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7013_low_1 (Length: 374)

Name: NF7013_low_1
Description: NF7013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7013_low_1
NF7013_low_1
[»] chr4 (2 HSPs)
chr4 (16-361)||(22875486-22875831)
chr4 (184-319)||(22846080-22846215)
[»] chr7 (2 HSPs)
chr7 (144-172)||(27389307-27389335)
chr7 (144-176)||(27481412-27481444)
[»] chr3 (2 HSPs)
chr3 (144-172)||(29094305-29094333)
chr3 (144-172)||(49772786-49772814)
[»] chr2 (1 HSPs)
chr2 (144-172)||(9478223-9478251)
[»] chr1 (2 HSPs)
chr1 (146-174)||(44032119-44032147)
chr1 (147-175)||(52190059-52190087)


Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 16 - 361
Target Start/End: Original strand, 22875486 - 22875831
Alignment:
Q  16 cacacggtgttaaaaaagggaaaaccgcaatttgaacccacccctctaaatatgaaatgttgttgcagatttttatcatcggagttgttcttacaaaaca 115  Q
    |||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22875486 cacacggtgttaaaaaagagaaaaatgcaatttgaacccacccctctaaatatgaaatgttgttgcagattcttatcatcggagttgttcttacaaaaca 22875585  T
Q  116 aattgtttaacttcatttcatattttattagcttatacataaacacttatatgataaacatcaatgataattgaagaaatagacagtaccagacgaggat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22875586 aattgtttaacttcatttcatattttattagcttatacataaacacttatatgataaacatcaacgataattgaagaaatagacagtaccagacgaggat 22875685  T
Q  216 ccaacacgccgccttcaacggcctttttaaatgcatcatagtaacgatcttgccacacttgagcttcgccaattttggtgatatctttatccgatagcgt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22875686 ccaacacgccgccttcaacggcctttttaaatgcatcatagtaacgatcttgccacacttgagcttcgccaattttggtgatatctttatccgatagcgt 22875785  T
Q  316 cgaatatgaaattcccgcgctgaaaataaacaatcaatcaaaaaac 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  22875786 cgaatatgaaattcccgcgctgaaaataaacaatcaatcaaaaaac 22875831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 184 - 319
Target Start/End: Original strand, 22846080 - 22846215
Alignment:
Q  184 aattgaagaaatagacagtaccagacgaggatccaacacgccgccttcaacggcctttttaaatgcatcatagtaacgatcttgccacacttgagcttcg 283  Q
    |||||||||||||||| ||||||| |||||||||||||||||||| |||||||| |||  |||||||||||||||   ||||| ||||||||||| |||     
T  22846080 aattgaagaaatagacggtaccagccgaggatccaacacgccgccatcaacggcttttcgaaatgcatcatagtaggaatctttccacacttgagtttca 22846179  T
Q  284 ccaattttggtgatatctttatccgatagcgtcgaa 319  Q
    ||||| ||| | |||||| |||||||||||||||||    
T  22846180 ccaatgttgataatatctgtatccgatagcgtcgaa 22846215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 172
Target Start/End: Complemental strand, 27389335 - 27389307
Alignment:
Q  144 tagcttatacataaacacttatatgataa 172  Q
    |||||||||||||||||||||||||||||    
T  27389335 tagcttatacataaacacttatatgataa 27389307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 176
Target Start/End: Original strand, 27481412 - 27481444
Alignment:
Q  144 tagcttatacataaacacttatatgataaacat 176  Q
    |||||||||||||||||||||||| ||||||||    
T  27481412 tagcttatacataaacacttatataataaacat 27481444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 172
Target Start/End: Complemental strand, 29094333 - 29094305
Alignment:
Q  144 tagcttatacataaacacttatatgataa 172  Q
    |||||||||||||||||||||||||||||    
T  29094333 tagcttatacataaacacttatatgataa 29094305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 172
Target Start/End: Original strand, 49772786 - 49772814
Alignment:
Q  144 tagcttatacataaacacttatatgataa 172  Q
    |||||||||||||||||||||||||||||    
T  49772786 tagcttatacataaacacttatatgataa 49772814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 172
Target Start/End: Complemental strand, 9478251 - 9478223
Alignment:
Q  144 tagcttatacataaacacttatatgataa 172  Q
    |||||||||||||||||||||||||||||    
T  9478251 tagcttatacataaacacttatatgataa 9478223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 174
Target Start/End: Original strand, 44032119 - 44032147
Alignment:
Q  146 gcttatacataaacacttatatgataaac 174  Q
    |||||||||||||||||||||||||||||    
T  44032119 gcttatacataaacacttatatgataaac 44032147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 175
Target Start/End: Complemental strand, 52190087 - 52190059
Alignment:
Q  147 cttatacataaacacttatatgataaaca 175  Q
    |||||||||||||||||||||||||||||    
T  52190087 cttatacataaacacttatatgataaaca 52190059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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