View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7013_low_4 (Length: 228)

Name: NF7013_low_4
Description: NF7013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7013_low_4
NF7013_low_4
[»] chr5 (7 HSPs)
chr5 (1-228)||(20694726-20694951)
chr5 (163-223)||(20083710-20083770)
chr5 (48-132)||(23157701-23157785)
chr5 (27-132)||(26070586-26070691)
chr5 (27-83)||(30790888-30790944)
chr5 (164-215)||(17695281-17695332)
chr5 (36-132)||(11274227-11274323)
[»] chr8 (10 HSPs)
chr8 (157-223)||(5153996-5154062)
chr8 (27-132)||(29291882-29291987)
chr8 (27-132)||(13583417-13583522)
chr8 (9-132)||(11437513-11437637)
chr8 (31-73)||(12774799-12774841)
chr8 (27-132)||(5153870-5153975)
chr8 (163-228)||(27097607-27097672)
chr8 (175-224)||(29292026-29292075)
chr8 (32-130)||(14424712-14424810)
chr8 (94-132)||(28291998-28292036)
[»] chr4 (10 HSPs)
chr4 (1-130)||(26159842-26159971)
chr4 (27-132)||(31859798-31859903)
chr4 (28-123)||(9288323-9288418)
chr4 (163-216)||(22119864-22119917)
chr4 (175-223)||(18444486-18444534)
chr4 (27-132)||(13064538-13064643)
chr4 (163-224)||(31859710-31859771)
chr4 (27-121)||(29437583-29437677)
chr4 (91-132)||(5906660-5906701)
chr4 (30-83)||(10576568-10576621)
[»] chr2 (12 HSPs)
chr2 (32-132)||(17152271-17152371)
chr2 (157-228)||(17414969-17415040)
chr2 (27-125)||(14921943-14922041)
chr2 (27-132)||(17415061-17415165)
chr2 (163-228)||(18818946-18819010)
chr2 (163-228)||(17862654-17862719)
chr2 (27-123)||(21848980-21849076)
chr2 (27-126)||(19541149-19541248)
chr2 (27-132)||(18236200-18236305)
chr2 (27-131)||(1732663-1732767)
chr2 (163-228)||(17884446-17884513)
chr2 (157-225)||(19541274-19541342)
[»] chr3 (5 HSPs)
chr3 (157-224)||(11475090-11475157)
chr3 (30-136)||(26418835-26418941)
chr3 (32-132)||(11474964-11475064)
chr3 (48-136)||(16970595-16970683)
chr3 (94-132)||(19219108-19219146)
[»] chr6 (6 HSPs)
chr6 (27-136)||(16439570-16439679)
chr6 (33-132)||(33638402-33638501)
chr6 (175-225)||(12972193-12972243)
chr6 (183-228)||(16439722-16439767)
chr6 (157-228)||(26499653-26499723)
chr6 (94-132)||(26499744-26499782)
[»] chr1 (5 HSPs)
chr1 (24-132)||(21548757-21548865)
chr1 (29-131)||(15298768-15298870)
chr1 (27-132)||(26854217-26854320)
chr1 (94-138)||(25727800-25727844)
chr1 (94-138)||(25736208-25736252)
[»] chr7 (9 HSPs)
chr7 (32-130)||(30405711-30405809)
chr7 (27-132)||(5312683-5312788)
chr7 (27-132)||(12358660-12358764)
chr7 (163-223)||(8308847-8308906)
chr7 (69-132)||(21545724-21545787)
chr7 (27-104)||(20461573-20461650)
chr7 (32-132)||(1074570-1074670)
chr7 (48-136)||(18496698-18496786)
chr7 (32-132)||(29544637-29544737)
[»] scaffold0185 (1 HSPs)
scaffold0185 (187-224)||(2768-2805)


Alignment Details
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 20694726 - 20694951
Alignment:
Q  1 aaattattcaactgcatatggacttggagtctttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattg 100  Q
    ||||||||||||||||||||   || ||||||||||||||| |||| ||||||||||| |||||||| |||||| | |||||||||||||||||||||||    
T  20694726 aaattattcaactgcatatgtgttttgagtctttttagtaagaaatcatgtaaatcggcaaaacaagacatcatatgaaggataacggacattaagattg 20694825  T
Q  101 aagataaatggttcttagaaggtatttgaagaaaatcccaagcnnnnnnnnnnnnntcattgcaagttctaagccattgcacgacggaagaacgctcgaa 200  Q
    |||||||||||||||||||||||||||||||| ||| ||||||             ||||||||||||||||||||||||||||||||||||||||||||    
T  20694826 aagataaatggttcttagaaggtatttgaagacaataccaagc--aaaaaaaaaaatcattgcaagttctaagccattgcacgacggaagaacgctcgaa 20694923  T
Q  201 aaagggacgaaaactgcaaaattcgcac 228  Q
    ||||||||||||||||||||||||||||    
T  20694924 aaagggacgaaaactgcaaaattcgcac 20694951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 20083710 - 20083770
Alignment:
Q  163 caagttctaagccattgcacgacggaagaacgctcgaaaaagggacgaaaactgcaaaatt 223  Q
    ||||||||||| || |||| ||||||||||  |||||||||||||||||||||||||||||    
T  20083710 caagttctaaggcactgcaagacggaagaatactcgaaaaagggacgaaaactgcaaaatt 20083770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 23157785 - 23157701
Alignment:
Q  48 atgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggtatttgaaga 132  Q
    ||||||||||| |||||||  || || || |||||||| ||| ||||||||||||| | ||||||||||| ||||||||| ||||    
T  23157785 atgtaaatcggcaaaacaaaacaccaagtgaaggataaaggatattaagattgaagttcaatggttcttataaggtatttaaaga 23157701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 26070586 - 26070691
Alignment:
Q  27 gagtctttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggtatt 126  Q
    ||||||||||||| | |||| |||||||| || |||||||| |||||  | |||||| | ||| || ||||||||||||  ||||||| || ||||| ||    
T  26070586 gagtctttttagtgagaaatcatgtaaattggcaaaacaagacatcacatgaaggatcaaggatatgaagattgaagatctatggttcgtataaggtttt 26070685  T
Q  127 tgaaga 132  Q
    ||||||    
T  26070686 tgaaga 26070691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 30790888 - 30790944
Alignment:
Q  27 gagtctttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggat 83  Q
    ||||||||||||| |||||| ||||||||||| || ||||| |||||||| ||||||    
T  30790888 gagtctttttagtgaaaaattatgtaaatcggcaacacaagacatcatgtgaaggat 30790944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 17695332 - 17695281
Alignment:
Q  164 aagttctaagccattgcacgacggaagaacgctcgaaaaagggacgaaaact 215  Q
    |||||| ||| |||| || ||| |||||||||||||||||||||||||||||    
T  17695332 aagttccaaggcatttcaagaccgaagaacgctcgaaaaagggacgaaaact 17695281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 11274323 - 11274227
Alignment:
Q  36 tagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggtatttgaaga 132  Q
    |||||| |||| ||||| ||||  ||| |||| |||||  | |||||| | ||| || |||||||||||  ||||||||||||||||| ||||||||    
T  11274323 tagtaagaaatcatgtatatcgacaaatcaagacatcacatgaaggatcaaggatatgaagattgaagaccaatggttcttagaaggtctttgaaga 11274227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 5153996 - 5154062
Alignment:
Q  157 tcattgcaagttctaagccattgcacgacggaagaacgctcgaaaaagggacgaaaactgcaaaatt 223  Q
    ||||| ||||||| ||| ||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  5153996 tcatttcaagttccaagacattgcaagacggaagaatgctcgaaaaagggacgaaaactgcaaaatt 5154062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 29291882 - 29291987
Alignment:
Q  27 gagtctttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggtatt 126  Q
    ||||||||||||||| |||| ||||||||||| ||||||||  |||| || ||| ||   ||| || || ||||||||| ||||||||||||||||| ||    
T  29291882 gagtctttttagtaagaaatcatgtaaatcggcaaaacaagatatcacgtgaagaatcgaggatatgaatattgaagatcaatggttcttagaaggtctt 29291981  T
Q  127 tgaaga 132  Q
    ||||||    
T  29291982 tgaaga 29291987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 13583522 - 13583417
Alignment:
Q  27 gagtctttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggtatt 126  Q
    ||||||||||||| | |||| ||||||||||  |||||||| ||||| || ||||||   ||| || | |||||||| | ||||||||||||||| ||||    
T  13583522 gagtctttttagtgagaaatcatgtaaatcgacaaaacaagacatcaagtgaaggatcgaggatatgatgattgaagttcaatggttcttagaagatatt 13583423  T
Q  127 tgaaga 132  Q
    ||||||    
T  13583422 tgaaga 13583417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 11437513 - 11437637
Alignment:
Q  9 caactgcatatggacttggagtctttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgt-taaggataacggacattaagattgaagataa 107  Q
    ||||| |||||| | || ||||||||||||| | |||| ||||||||||| |||||||| ||||| ||  |||||| | ||| || || ||||||| | |    
T  11437513 caactccatatgtattttgagtctttttagtgagaaatcatgtaaatcggcaaaacaagacatcaagtgaaaggatcaaggatatgaaaattgaagttca 11437612  T
Q  108 atggttcttagaaggtatttgaaga 132  Q
    ||||||||||||||  |||||||||    
T  11437613 atggttcttagaagacatttgaaga 11437637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 12774841 - 12774799
Alignment:
Q  31 ctttttagtaaaaaataatgtaaatcggaaaaacaaggcatca 73  Q
    ||||||||||| ||||||||||||||||||||||||| |||||    
T  12774841 ctttttagtaagaaataatgtaaatcggaaaaacaagtcatca 12774799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 5153870 - 5153975
Alignment:
Q  27 gagtctttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggtatt 126  Q
    ||||||||||||||| |||| |||||||| || |||||||| ||| | || ||||||   ||| || |||||||||||| |||| || || |||||| ||    
T  5153870 gagtctttttagtaagaaatcatgtaaataggcaaaacaagacataaagtgaaggatcgaggatatgaagattgaagatcaatgattattggaaggtttt 5153969  T
Q  127 tgaaga 132  Q
    ||||||    
T  5153970 tgaaga 5153975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 27097672 - 27097607
Alignment:
Q  163 caagttctaagccattgcacgacggaagaacgctcgaaaaagggacgaaaactgcaaaattcgcac 228  Q
    ||||||| ||| ||||||| ||||||||||| ||| |||||| || |||||| |||||||||||||    
T  27097672 caagttccaaggcattgcaagacggaagaacactcaaaaaagagatgaaaaccgcaaaattcgcac 27097607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 29292026 - 29292075
Alignment:
Q  175 cattgcacgacggaagaacgctcgaaaaagggacgaaaactgcaaaattc 224  Q
    ||||||| ||||||||||||| ||||||||||||||||| || |||||||    
T  29292026 cattgcaagacggaagaacgcacgaaaaagggacgaaaattgtaaaattc 29292075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 14424810 - 14424712
Alignment:
Q  32 tttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggtatttgaa 130  Q
    |||||||| | |||| ||||||||||| |||||||| || || |  |||||||   || |  |||||||||||| ||||||||||||||||| ||||||    
T  14424810 tttttagtgagaaatcatgtaaatcggcaaaacaagacaacaagggaaggatatatgataagaagattgaagatcaatggttcttagaaggtttttgaa 14424712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 28292036 - 28291998
Alignment:
Q  94 aagattgaagataaatggttcttagaaggtatttgaaga 132  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  28292036 aagattgaagattaatggttcttagaaggtctttgaaga 28291998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 26159842 - 26159971
Alignment:
Q  1 aaattattcaactgcatatggacttggagtctttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattg 100  Q
    ||||||| ||||| ||||||   || ||||||||||||| |||||| ||||| ||| | |||||||| |||||||| ||||||   ||| || |||||||    
T  26159842 aaattatccaacttcatatgtgttttgagtctttttagtgaaaaatcatgtagatcagcaaaacaagacatcatgtgaaggattcaggatatgaagattg 26159941  T
Q  101 aagataaatggttcttagaaggtatttgaa 130  Q
    ||||| ||||||||||| ||||| ||||||    
T  26159942 aagatcaatggttcttataaggtctttgaa 26159971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 31859903 - 31859798
Alignment:
Q  27 gagtctttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggtatt 126  Q
    ||||||||||||| | |||| ||||||||| | |||||||| || || || ||||||   ||| || || ||||||||| ||||||||||||||||||||    
T  31859903 gagtctttttagtgagaaatcatgtaaatcagcaaaacaagacaccaggtgaaggatcgaggatatgaatattgaagatcaatggttcttagaaggtatt 31859804  T
Q  127 tgaaga 132  Q
    ||||||    
T  31859803 tgaaga 31859798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 9288323 - 9288418
Alignment:
Q  28 agtctttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggt 123  Q
    |||||||||||| | |||| ||||||||||| |||||||| ||||| || |||||| | ||| || |||||||||||  |||||||||||| ||||    
T  9288323 agtctttttagtgagaaatcatgtaaatcggcaaaacaagacatcaagtgaaggatcaaggatatgaagattgaagaccaatggttcttagcaggt 9288418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 22119864 - 22119917
Alignment:
Q  163 caagttctaagccattgcacgacggaagaacgctcgaaaaagggacgaaaactg 216  Q
    ||||||| ||| ||||||| ||||||||||||||||||||||| ||||||||||    
T  22119864 caagttccaagtcattgcaagacggaagaacgctcgaaaaaggaacgaaaactg 22119917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 18444486 - 18444534
Alignment:
Q  175 cattgcacgacggaagaacgctcgaaaaagggacgaaaactgcaaaatt 223  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||||||    
T  18444486 cattgcaagacggaagaacactcgaaaaagggatgaaaactgcaaaatt 18444534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 13064538 - 13064643
Alignment:
Q  27 gagtctttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggtatt 126  Q
    ||||| ||||||||| |||| |||||||| || ||| |||| ||||| || |||||| | ||| |  | |||||||| | ||||||||||||| ||||||    
T  13064538 gagtcattttagtaagaaatcatgtaaattggcaaatcaagacatcacgtgaaggatcaaggataagacgattgaagttcaatggttcttagagggtatt 13064637  T
Q  127 tgaaga 132  Q
    ||||||    
T  13064638 tgaaga 13064643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 31859771 - 31859710
Alignment:
Q  163 caagttctaagccattgcacgacggaagaacgctcgaaaaagggacgaaaactgcaaaattc 224  Q
    ||||||| ||| |||| || |||||||||||||  |||||| ||||||||||||||||||||    
T  31859771 caagttccaaggcatttcaagacggaagaacgcgtgaaaaaaggacgaaaactgcaaaattc 31859710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 29437583 - 29437677
Alignment:
Q  27 gagtctttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaag 121  Q
    ||||||||||| | | |||| ||||||||||| || ||||| ||||| || ||||||   ||| || |||||||||| | |||||||||||||||    
T  29437583 gagtctttttaatgagaaatcatgtaaatcggcaagacaagacatcacgtgaaggatcgaggatatgaagattgaagttcaatggttcttagaag 29437677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 5906701 - 5906660
Alignment:
Q  91 attaagattgaagataaatggttcttagaaggtatttgaaga 132  Q
    ||||||||| ||||| ||||||||||||||||| ||||||||    
T  5906701 attaagatttaagattaatggttcttagaaggtttttgaaga 5906660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 10576568 - 10576621
Alignment:
Q  30 tctttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggat 83  Q
    ||||| |||| | |||| |||||||||||||||||||| |||||||| ||||||    
T  10576568 tctttctagtgagaaattatgtaaatcggaaaaacaagacatcatgtgaaggat 10576621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 17152271 - 17152371
Alignment:
Q  32 tttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggtatttgaag 131  Q
    |||||||||| |||| ||||||||||| |||||||| |||| ||| |||||| | ||| || |||| |||| || ||||||||||||||||| |||||||    
T  17152271 tttttagtaagaaatcatgtaaatcggcaaaacaagacatcgtgtgaaggatcaaggatatgaagaatgaatatgaatggttcttagaaggtttttgaag 17152370  T
Q  132 a 132  Q
    |    
T  17152371 a 17152371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 17415040 - 17414969
Alignment:
Q  157 tcattgcaagttctaagccattgcacgacggaagaacgctcgaaaaagggacgaaaactgcaaaattcgcac 228  Q
    ||||| ||||||||||| ||||||| ||||||||||||||| |||||||||| |||||| || |||||||||    
T  17415040 tcatttcaagttctaagacattgcaagacggaagaacgctcaaaaaagggacaaaaactacataattcgcac 17414969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 14922041 - 14921943
Alignment:
Q  27 gagtctttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggtat 125  Q
    |||||||||| || | |||| |||||||||||||||||||  |||||||| ||| ||   ||| || |||||||||| | |||||||||||||||||||    
T  14922041 gagtctttttcgtgagaaatcatgtaaatcggaaaaacaatacatcatgtgaagaatcgaggatatgaagattgaagttcaatggttcttagaaggtat 14921943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 17415165 - 17415061
Alignment:
Q  27 gagtctttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggtatt 126  Q
    ||||||||||||| | ||||  |||||||||| |||||||| ||||| || ||||||   |||||| ||||||||| || |||||||||||| || ||||    
T  17415165 gagtctttttagtgagaaatcgtgtaaatcggcaaaacaagacatcacgtgaaggatcgaggacatgaagattgaa-atcaatggttcttaggagttatt 17415067  T
Q  127 tgaaga 132  Q
    ||||||    
T  17415066 tgaaga 17415061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 18818946 - 18819010
Alignment:
Q  163 caagttctaagccattgcacgacggaagaacgctcgaaaaagggacgaaaactgcaaaattcgcac 228  Q
    ||||||| ||| ||||||| |||||||||| |||| ||||||||| ||||||||||||||||||||    
T  18818946 caagttccaagacattgcaagacggaagaatgctc-aaaaagggatgaaaactgcaaaattcgcac 18819010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 17862654 - 17862719
Alignment:
Q  163 caagttctaagccattgcacgacggaagaacgctcgaaaaagggacgaaaactgcaaaattcgcac 228  Q
    ||||||| ||| |||| || | ||||| |||||||||||||||||| |||||||||||||| ||||    
T  17862654 caagttccaagacatttcatggcggaaaaacgctcgaaaaagggacaaaaactgcaaaatttgcac 17862719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 21849076 - 21848980
Alignment:
Q  27 gagtctttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggt 123  Q
    ||||||||||||| | |||||||||||||||||| |||||| |||||  | |||||| | ||| | ||| | |||| || ||||||||||| |||||    
T  21849076 gagtctttttagtgagaaataatgtaaatcggaagaacaagacatcacatgaaggatcaaggataataataatgaaaatcaatggttcttaaaaggt 21848980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 19541149 - 19541248
Alignment:
Q  27 gagtctttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggtatt 126  Q
    |||||||| |||| | |||| ||||||||||| |||| ||| ||||| || ||||||   ||| || |||||||||||  ||||||||||| ||||||||    
T  19541149 gagtctttctagtgagaaatcatgtaaatcggcaaaataagacatcaagtgaaggatcgaggatatgaagattgaagaccaatggttcttataaggtatt 19541248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 18236305 - 18236200
Alignment:
Q  27 gagtctttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggtatt 126  Q
    ||||||||||||| | |||| |||||| |||| |||||||| |||||  | |||||| ||  | || ||||||||||   |||||||||||||||||  |    
T  18236305 gagtctttttagtgagaaatcatgtaactcggcaaaacaagacatcacatgaaggatcacaaatatgaagattgaaggccaatggttcttagaaggttgt 18236206  T
Q  127 tgaaga 132  Q
    ||||||    
T  18236205 tgaaga 18236200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 1732663 - 1732767
Alignment:
Q  27 gagtctttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggtatt 126  Q
    |||||||||| |||| |||| |||||||| |  |||||||| |||||  | |||||| | | | || |||||||||||| |||| |||||||||  ||||    
T  1732663 gagtctttttggtaagaaatcatgtaaattgacaaaacaagacatcacatgaaggattaagaatatgaagattgaagatcaatgattcttagaatatatt 1732762  T
Q  127 tgaag 131  Q
    |||||    
T  1732763 tgaag 1732767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 17884513 - 17884446
Alignment:
Q  163 caagttctaagccattgcacgacggaagaa--cgctcgaaaaagggacgaaaactgcaaaattcgcac 228  Q
    ||||||||||| ||||  | ||||||||||  ||||||||| | ||||||||| ||||||||||||||    
T  17884513 caagttctaagacattttaagacggaagaaaacgctcgaaacatggacgaaaattgcaaaattcgcac 17884446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 19541274 - 19541342
Alignment:
Q  157 tcattgcaagttctaagccattgcacgacggaagaacgctcgaaaaagggacgaaaactgcaaaattcg 225  Q
    ||||| |||||||  || ||||||| ||| ||| || ||||||||||||||| |||||| |||||||||    
T  19541274 tcatttcaagttcataggcattgcaagacagaaaaatgctcgaaaaagggacaaaaactacaaaattcg 19541342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 11475090 - 11475157
Alignment:
Q  157 tcattgcaagttctaagccattgcacgacggaagaacgctcgaaaaagggacgaaaactgcaaaattc 224  Q
    ||||| ||||||| ||| | ||||| ||||||||||||||  ||||||||||||||||||||||||||    
T  11475090 tcatttcaagttccaaggcgttgcaagacggaagaacgctaaaaaaagggacgaaaactgcaaaattc 11475157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 26418835 - 26418941
Alignment:
Q  30 tctttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggtatttga 129  Q
    |||||||||| | |||| |||||||||||||||| ||| ||||   | |||||| | ||| || |||||| |||||  |||||||||||||||| ||| |    
T  26418835 tctttttagtgagaaatcatgtaaatcggaaaaataagacatcgcatgaaggatcaaggatatgaagattaaagattgatggttcttagaaggtttttaa 26418934  T
Q  130 agaaaat 136  Q
    |||||||    
T  26418935 agaaaat 26418941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 11474964 - 11475064
Alignment:
Q  32 tttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggtatttgaag 131  Q
    |||||||| | |||| ||||||||||| |||||||| |||||  | ||||||    || || | |||| ||||||||||||||||||||| |||||||||    
T  11474964 tttttagtgagaaatcatgtaaatcggcaaaacaagacatcacatgaaggatcgaagatatgaggattcaagataaatggttcttagaagatatttgaag 11475063  T
Q  132 a 132  Q
    |    
T  11475064 a 11475064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 136
Target Start/End: Original strand, 16970595 - 16970683
Alignment:
Q  48 atgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggtatttgaagaaaat 136  Q
    ||||||||||  ||| |||| |||||||| |||||| | ||| || ||| |||||||  || |||||||||||||| ||||||||||||    
T  16970595 atgtaaatcgacaaatcaagacatcatgtgaaggatcaaggatatgaagtttgaagaccaacggttcttagaaggtttttgaagaaaat 16970683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 19219146 - 19219108
Alignment:
Q  94 aagattgaagataaatggttcttagaaggtatttgaaga 132  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  19219146 aagattgaagatcaatggttcttagaaggtttttgaaga 19219108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 136
Target Start/End: Original strand, 16439570 - 16439679
Alignment:
Q  27 gagtctttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggtatt 126  Q
    ||||||||||||| | |||| ||||||||| |||||||||| |||||  | || ||| | ||| || |||| ||||||| |||||||||||||| |  ||    
T  16439570 gagtctttttagtgagaaatcatgtaaatcagaaaaacaagacatcagatgaaagatcagggatatgaagaatgaagatcaatggttcttagaatggttt 16439669  T
Q  127 tgaagaaaat 136  Q
    ||||||||||    
T  16439670 tgaagaaaat 16439679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 132
Target Start/End: Complemental strand, 33638501 - 33638402
Alignment:
Q  33 ttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggtatttgaaga 132  Q
    ||||||| | |||| ||||||||||| |||||||   |||| || |||||| | ||| || |||||||||||| ||||||||||| ||||| ||||||||    
T  33638501 ttttagtgagaaatcatgtaaatcggcaaaacaatatatcaagtgaaggatcaaggatatgaagattgaagatcaatggttcttataaggtctttgaaga 33638402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 12972243 - 12972193
Alignment:
Q  175 cattgcacgacggaagaacgctcgaaaaagggacgaaaactgcaaaattcg 225  Q
    ||||||| |||||||||| |||||||||||  |||||||||||||||||||    
T  12972243 cattgcaagacggaagaatgctcgaaaaagtaacgaaaactgcaaaattcg 12972193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 16439722 - 16439767
Alignment:
Q  183 gacggaagaacgctcgaaaaagggacgaaaactgcaaaattcgcac 228  Q
    ||||||||||||||||||||||||| ||| |||||||| |||||||    
T  16439722 gacggaagaacgctcgaaaaagggaggaatactgcaaagttcgcac 16439767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 26499723 - 26499653
Alignment:
Q  157 tcattgcaagttctaagccattgcacgacggaagaacgctcgaaaaagggacgaaaactgcaaaattcgcac 228  Q
    ||||| ||||||  ||| ||||||| ||||||| ||||||||||||| | ||||||||||||||||| ||||    
T  26499723 tcatttcaagtttcaaggcattgcaagacggaacaacgctcgaaaaa-gaacgaaaactgcaaaatttgcac 26499653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 26499782 - 26499744
Alignment:
Q  94 aagattgaagataaatggttcttagaaggtatttgaaga 132  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  26499782 aagattgaagatcaatggttcttagaaggtttttgaaga 26499744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 21548757 - 21548865
Alignment:
Q  24 ttggagtctttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggt 123  Q
    ||||||||||| ||||   |||| | |||||||||||||||||| ||||| || ||| ||   ||| || |||||||||| |||||||||||||||||      
T  21548757 ttggagtctttctagtgtgaaatcaagtaaatcggaaaaacaagacatcacgtaaagaattgtggatatgaagattgaagctaaatggttcttagaagac 21548856  T
Q  124 atttgaaga 132  Q
    |||||||||    
T  21548857 atttgaaga 21548865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 15298870 - 15298768
Alignment:
Q  29 gtctttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggtatttg 128  Q
    |||| |||||| | |||| ||||||||||| ||||||||  ||||||| ||||||   ||| || |||||| ||||| ||||||||||| ||| ||||||    
T  15298870 gtctatttagtgataaatcatgtaaatcggcaaaacaagaaatcatgtaaaggatcgaggatatgaagattcaagatcaatggttcttaaaagttatttg 15298771  T
Q  129 aag 131  Q
    |||    
T  15298770 aag 15298768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 26854320 - 26854217
Alignment:
Q  27 gagtctttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggtatt 126  Q
    ||||||||||||  | |||| ||||||| ||| |||||||| ||| | || |||||| |  || || |||||||||| | ||||||||||||||| ||||    
T  26854320 gagtctttttag--agaaatcatgtaaaccggcaaaacaagacattaagtgaaggatcaatgatatgaagattgaagttcaatggttcttagaagatatt 26854223  T
Q  127 tgaaga 132  Q
    ||||||    
T  26854222 tgaaga 26854217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 25727844 - 25727800
Alignment:
Q  94 aagattgaagataaatggttcttagaaggtatttgaagaaaatcc 138  Q
    |||||||||||| |||||||||| |||||| |||||||| |||||    
T  25727844 aagattgaagatcaatggttcttggaaggtttttgaagacaatcc 25727800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 25736252 - 25736208
Alignment:
Q  94 aagattgaagataaatggttcttagaaggtatttgaagaaaatcc 138  Q
    |||||||||||| |||||||||| |||||| |||||||| |||||    
T  25736252 aagattgaagatcaatggttcttggaaggtttttgaagacaatcc 25736208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 30405711 - 30405809
Alignment:
Q  32 tttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggtatttgaa 130  Q
    |||||||| | |||| ||||||||||| |||| |||  ||||||| ||||||   ||| || |||||||||| | |||| |||||||||||||||||||    
T  30405711 tttttagtgagaaatcatgtaaatcggcaaaataagaaatcatgtgaaggatcgaggatatgaagattgaagttcaatgattcttagaaggtatttgaa 30405809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 5312788 - 5312683
Alignment:
Q  27 gagtctttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggtatt 126  Q
    ||||||||||||| | |||| ||||||||||| ||||  |  ||||| || |||||| | ||| || | ||||||| |||||||||||||||||| | ||    
T  5312788 gagtctttttagtgataaatcatgtaaatcggcaaaaataaacatcaagtgaaggatcaaggatatgaggattgaacataaatggttcttagaagatttt 5312689  T
Q  127 tgaaga 132  Q
    ||||||    
T  5312688 tgaaga 5312683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 12358764 - 12358660
Alignment:
Q  27 gagtctttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggtatt 126  Q
    ||||||||||||| | ||||||| |||||||||||| |||   ||| | | ||| || | ||| || |||||||||||| ||||||||||||||||| ||    
T  12358764 gagtctttttagtgagaaataatataaatcggaaaagcaaaatatcttatgaag-atcaaggatatgaagattgaagatcaatggttcttagaaggtttt 12358666  T
Q  127 tgaaga 132  Q
    ||||||    
T  12358665 tgaaga 12358660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 8308906 - 8308847
Alignment:
Q  163 caagttctaagccattgcacgacggaagaacgctcgaaaaagggacgaaaactgcaaaatt 223  Q
    ||||||| |||  |||||| ||||||||||||||| ||||||||| |||||||||||||||    
T  8308906 caagttccaaggtattgcaagacggaagaacgctc-aaaaagggaggaaaactgcaaaatt 8308847  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 21545787 - 21545724
Alignment:
Q  69 catcatgttaaggataacggacattaagattgaagataaatggttcttagaaggtatttgaaga 132  Q
    ||||| || |||||| | ||| || |||||||||||| |||||||||||||| |||||||||||    
T  21545787 catcacgtgaaggatcaaggatatgaagattgaagatcaatggttcttagaaagtatttgaaga 21545724  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 20461650 - 20461573
Alignment:
Q  27 gagtctttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaaga 104  Q
    ||||||||||||| | |||| ||||||||||| |||| ||| ||||| || |||||| | ||| || |||||||||||    
T  20461650 gagtctttttagtgagaaatcatgtaaatcggcaaaataagacatcaagtgaaggatcaaggatatgaagattgaaga 20461573  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 1074570 - 1074670
Alignment:
Q  32 tttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggtatttgaag 131  Q
    |||||||| | |||| |||||||| |||||| |||| ||||| || |||||| | ||| || || ||||||||  ||||||||||| |||||  ||||||    
T  1074570 tttttagtgagaaatcatgtaaattggaaaagcaagacatcaagtaaaggatcaaggatatgaaaattgaagaccaatggttcttaaaaggttgttgaag 1074669  T
Q  132 a 132  Q
    |    
T  1074670 a 1074670  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 136
Target Start/End: Original strand, 18496698 - 18496786
Alignment:
Q  48 atgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggtatttgaagaaaat 136  Q
    |||||||||||||||||  | ||||  || |||||| | ||| || |||||||||||  |||||||||||||| ||  |||||||||||    
T  18496698 atgtaaatcggaaaaacgggacatcgagtgaaggatcaaggatatgaagattgaagaataatggttcttagaatgttgttgaagaaaat 18496786  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 29544637 - 29544737
Alignment:
Q  32 tttttagtaaaaaataatgtaaatcggaaaaacaaggcatcatgttaaggataacggacattaagattgaagataaatggttcttagaaggtatttgaag 131  Q
    ||||||||||  ||| ||||||||||  ||| |||| |||||  | |||||| |  || || |||||||||||| |||| |||||||||||| |||||||    
T  29544637 tttttagtaaggaatcatgtaaatcgacaaaccaagacatcacatgaaggatcaaagatatgaagattgaagatcaatgattcttagaaggtttttgaag 29544736  T
Q  132 a 132  Q
    |    
T  29544737 a 29544737  T

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Target: scaffold0185 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 2768 - 2805
Alignment:
Q  187 gaagaacgctcgaaaaagggacgaaaactgcaaaattc 224  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  2768 gaagaacactcgaaaaagggacgaaaactgcaaaattc 2805  T

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