View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7014_low_1 (Length: 249)

Name: NF7014_low_1
Description: NF7014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7014_low_1
NF7014_low_1
[»] chr8 (1 HSPs)
chr8 (4-222)||(41294449-41294667)
[»] chr3 (2 HSPs)
chr3 (81-222)||(7755507-7755648)
chr3 (106-222)||(4086182-4086298)
[»] chr5 (2 HSPs)
chr5 (81-179)||(26153224-26153320)
chr5 (1-61)||(10049294-10049354)
[»] chr2 (3 HSPs)
chr2 (101-182)||(2210353-2210435)
chr2 (11-63)||(29712432-29712484)
chr2 (9-81)||(6766463-6766535)
[»] chr4 (2 HSPs)
chr4 (81-222)||(43470872-43471012)
chr4 (2-76)||(41463905-41463978)
[»] chr1 (2 HSPs)
chr1 (1-77)||(19038954-19039030)
chr1 (4-77)||(32153052-32153125)
[»] chr7 (2 HSPs)
chr7 (30-77)||(28904860-28904907)
chr7 (2-69)||(31542260-31542327)


Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 41294667 - 41294449
Alignment:
Q  4 ctccggtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttattatatctcataatttctaagaaaatgattgatgttacgagac 103  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||    
T  41294667 ctccggtgtgtttctctcaagttttctgcagtgtgggaatctacaccattaaatttattatatctcataatttttaggaaaatgcttgatgttacgagac 41294568  T
Q  104 acagtcttgcacgaatttatacgaatagtaactattcattttattttcaaaatccaacaagctagattaaatttctataaagaatataggagtaactacc 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41294567 acagtcttgcacgaatttatacgaatagtaactattcattttattttcaaaacccaacaagctagattaaatttctataaagaatataggagtaactacc 41294468  T
Q  204 atctgccaacacttctcag 222  Q
    ||||||||||| |||||||    
T  41294467 atctgccaacatttctcag 41294449  T

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Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 81 - 222
Target Start/End: Original strand, 7755507 - 7755648
Alignment:
Q  81 gaaaatgattgatgttacgagacacagtcttgcacgaatttatacgaatagtaactattcattttattttcaaaatccaacaagctagattaaatttcta 180  Q
    ||||||| || |||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  7755507 gaaaatgcttaatgttacgagacacggtattgtacgaatttatacgaatagtaactattcattttatttttaaaacccaacaagctagattaaatttcta 7755606  T
Q  181 taaagaatataggagtaactaccatctgccaacacttctcag 222  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  7755607 taaagtatataggagtaactaccatctgccaacacttctcag 7755648  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 4086182 - 4086298
Alignment:
Q  106 agtcttgcacgaatttatacgaatagtaactattcattttattttcaaaatccaacaagctagattaaatttctataaagaatataggagtaactaccat 205  Q
    |||||||||  |||||| |||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||| || ||| || |||||| |||||    
T  4086182 agtcttgcataaatttagacgaatggtaattattcattttattttcaaaacccaacaagctagattaaatttctatagagtatacagcagtaaccaccat 4086281  T
Q  206 ctgccaacacttctcag 222  Q
    |||||||||||||||||    
T  4086282 ctgccaacacttctcag 4086298  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 81 - 179
Target Start/End: Original strand, 26153224 - 26153320
Alignment:
Q  81 gaaaatgattgatgttacgagacacagtcttgcacgaatttatacgaatagtaactattcattttattttcaaaatccaacaagctagattaaatttct 179  Q
    ||||||| || |||||||||  |||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26153224 gaaaatgcttaatgttacga--cacaatcttgcacgaatttagacgaatggtaactattcattttattttcaaaatccaacaagctagattaaatttct 26153320  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 10049294 - 10049354
Alignment:
Q  1 ttcctccggtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttat 61  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||    
T  10049294 ttcctccggtgtgtttttctcctgttttttgcagtgtgggaatctacaccattaaatttat 10049354  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 182
Target Start/End: Complemental strand, 2210435 - 2210353
Alignment:
Q  101 gacacagtcttgcacgaatttatacgaatag-taactattcattttattttcaaaatccaacaagctagattaaatttctata 182  Q
    |||| ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2210435 gacatagtcttgcacgaatttagacgaatgggtaactattcattttattttcaaaatccaacaagctagattaaatttctata 2210353  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 29712432 - 29712484
Alignment:
Q  11 gtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttatta 63  Q
    |||||| ||||| |||||||| |||||||||||||||||||||||||||||||    
T  29712432 gtgtttttctcctgttttctgtagtgtgggaatctacaccattaaatttatta 29712484  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 6766463 - 6766535
Alignment:
Q  9 gtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttattatatctcataatttctaag 81  Q
    |||||||| ||||| ||||||| | |||||  ||||||||||| ||||  |||||| ||||||||||| ||||    
T  6766463 gtgtgtttttctcctgttttctactgtgtgaaaatctacaccaataaacatattatctctcataatttttaag 6766535  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 81 - 222
Target Start/End: Complemental strand, 43471012 - 43470872
Alignment:
Q  81 gaaaatgattgatgttacgagacacagtcttgcacgaatttatacgaatagtaactattcattttattttcaaaatccaacaagctagattaaatttcta 180  Q
    ||||||| || |||||||||  || |||||||||| |||||| |||||| || |||||| |||||||||  ||||  || ||||||||||||||||||||    
T  43471012 gaaaatgcttaatgttacga--cagagtcttgcacaaatttagacgaatggtgactatttattttatttgtaaaacacagcaagctagattaaatttcta 43470915  T
Q  181 taaagaata-taggagtaactaccatctgccaacacttctcag 222  Q
    ||||| |||  || |||||| ||||||||||||||||||||||    
T  43470914 taaagtatacaagtagtaaccaccatctgccaacacttctcag 43470872  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 41463905 - 41463978
Alignment:
Q  2 tcctccggtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttattatatctcataattt 76  Q
    |||||| |||||||| ||| |  ||||||||||||| | ||||||||||||||||| |||||| |||| ||||||    
T  41463905 tcctcccgtgtgtttttcttcgattttctgcagtgtag-aatctacaccattaaatatattatctctcttaattt 41463978  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 19038954 - 19039030
Alignment:
Q  1 ttcctccggtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttattatatctcataatttc 77  Q
    ||||||| |||||||| ||||  ||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||    
T  19038954 ttcctccagtgtgtttttctcttgttttctgcggtgtgggaatctacaacattaaatttattatctctcataatttc 19039030  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 32153125 - 32153052
Alignment:
Q  4 ctccggtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttattatatctcataatttc 77  Q
    |||| |||||||| |||||  ||||| ||| |||||||||||| ||||||||||| ||||| |||| |||||||    
T  32153125 ctccagtgtgtttttctcctattttccgcaatgtgggaatctaaaccattaaattcattatctctcctaatttc 32153052  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 28904907 - 28904860
Alignment:
Q  30 tgcagtgtgggaatctacaccattaaatttattatatctcataatttc 77  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||    
T  28904907 tgcagtgtgggaatctacaccattaaatttattatctctcttaatttc 28904860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 31542327 - 31542260
Alignment:
Q  2 tcctccggtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttattatatctc 69  Q
    |||||| |||||||| ||||||||||||| |||||||| |||||||||||| |||| |||||| ||||    
T  31542327 tcctcctgtgtgtttttctccagttttctccagtgtggaaatctacaccatcaaatgtattatctctc 31542260  T

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