View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7015_high_1 (Length: 273)
Name: NF7015_high_1
Description: NF7015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7015_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 13 - 256
Target Start/End: Complemental strand, 22813201 - 22812950
Alignment:
| Q |
13 |
acctgtgtaattattttaattaaaaaggagagtaatgtccacgcgtgtaattgcagaatnnnnnnnnnnn--------tcaaggaaaaattggcaggcac |
104 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||| ||||||| |
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| T |
22813201 |
acctgtgtaattattttaattaaaaaggagagtaatatccacgcgtgtaattgcagaataaaaaaaaaaagaaaaaaatcaagaaaaaattgacaggcac |
22813102 |
T |
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| Q |
105 |
gtgcaatcttcatgaaagctaacattgaactttcatcttcaatccataccaaacctctatcttttccatgcaatcgtctattaatttaccagaaacccta |
204 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| |||| |||| ||||||||||||||||||||||||| |
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| T |
22813101 |
gtgcaatcttcatgaaaggtaacattgaactttcatcttcaatccataccaaacatttatcttcgccattcaattgtctattaatttaccagaaacccta |
22813002 |
T |
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| Q |
205 |
tcatcttcaatccataccaaacttaaaccaatacctcctcctcctcccaata |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
22813001 |
tcatcttcaatccataccaaacttaaaccaatacctcctccccctcccaata |
22812950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 256
Target Start/End: Original strand, 39688486 - 39688726
Alignment:
| Q |
13 |
acctgtgtaattattttaattaaaaaggagagtaatgtccacgcgtgtaattgcagaatnnnnnnnnnnntcaaggaaaaattggcaggcacgtgcaatc |
112 |
Q |
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| T |
39688486 |
acctgtgtaattattttaattaaaaaggagagtaatatccacgcgtgtaattgcagaagaaaaaaaa-----aaaaaaaaattgacaggcacgtgcaatc |
39688580 |
T |
|
| Q |
113 |
ttcatgaaagctaacattgaactttc--atcttcaatccataccaaacctctatcttttccatgcaatcgtctattaatttaccagaaaccctatcatct |
210 |
Q |
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| T |
39688581 |
ttcatgaaaggtaacattgaactttctcatcttcaatccataccaaacatttatcttcgccattcaattgtctattaatttaccagaaaccctatcatct |
39688680 |
T |
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| Q |
211 |
tcaatccataccaaacttaaaccaatacctcctcctcctcccaata |
256 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
39688681 |
tcaatccgtaccaaacttaaaccaatacctcctcctcatcccaata |
39688726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 83 - 248
Target Start/End: Complemental strand, 2214877 - 2214712
Alignment:
| Q |
83 |
tcaaggaaaaattggcaggcacgtgcaatcttcatgaaagctaacattgaactttcatcttcaatccataccaaacctctatcttttccatgcaatcgtc |
182 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |||| |||||||| |
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| T |
2214877 |
tcaagaaaaaattggcaggcacgtgcaatcttcatgaaagataacattgaactttcatcttgaatccataccaaacctttatcttcgccattcaatcgtc |
2214778 |
T |
|
| Q |
183 |
tattaatttaccagaaaccctatcatcttcaatccataccaaacttaaaccaatacctcctcctcc |
248 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2214777 |
tattaatttaccagaaacactatcatcttcaatccataccaaacttaaaccaatacctcctcctcc |
2214712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 83 - 235
Target Start/End: Complemental strand, 21844194 - 21844043
Alignment:
| Q |
83 |
tcaaggaaaaattggcaggcacgtgcaatcttcatgaaagctaacattgaactttcatcttcaatccataccaaacctctatcttttccatgcaatcgtc |
182 |
Q |
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||||||| |||||||||||||| || |||||||||||||| |||||||||||||||| |||||||||||||||||| | |||||| | ||| ||||| || |
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| T |
21844194 |
tcaaggacaaattggcaggcacatg-aatcttcatgaaaggtaacattgaactttcaccttcaatccataccaaacatttatcttcttcattcaatcttc |
21844096 |
T |
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| Q |
183 |
tattaatttaccagaaaccctatcatcttcaatccataccaaacttaaaccaa |
235 |
Q |
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|||||||| ||| ||||||||| ||||| |||||||||||||| ||||||| |
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| T |
21844095 |
cattaattttccaaaaaccctattatcttaaatccataccaaacaaaaaccaa |
21844043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 21844271 - 21844215
Alignment:
| Q |
15 |
ctgtgtaattattttaattaaaaaggagagtaatgtccacgcgtgtaattgcagaat |
71 |
Q |
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|||||||||| |||||||| |||||||||||||| |||| ||||||||||||| ||| |
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| T |
21844271 |
ctgtgtaatttttttaattgaaaaggagagtaatatccatgcgtgtaattgcaaaat |
21844215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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