View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7016_high_26 (Length: 229)
Name: NF7016_high_26
Description: NF7016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7016_high_26 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 46346455 - 46346229
Alignment:
| Q |
7 |
ggtattattcttgtaacaagtgagaataaagaagacaaactctgtaaccatagataaaagcttcaccccaaaacctttaacaggatacaaaataaattta |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46346455 |
ggtattattcttgtaacaagtgagaataaagaagacaaactctgtaaccatagataaaagcttcaccccaaaacctttaacaggatacaaaataaattta |
46346356 |
T |
|
| Q |
107 |
aatgtgcagtatcagataatgtagttatgctata----ctaaaggatatagccttattgctgcatcaaatttttatttggagagaacatgaatcatatat |
202 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46346355 |
aatgtgcactatcagataatgtagttatgctatatactataaaggatatagccttattgctgcatcaaatttttatttggagagaacatgaatcatatat |
46346256 |
T |
|
| Q |
203 |
acaatggtgcggcactttgtagccttt |
229 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
46346255 |
acaatggtgcggcactttgtagccttt |
46346229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University