View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7016_high_3 (Length: 510)
Name: NF7016_high_3
Description: NF7016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7016_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 195 - 478
Target Start/End: Complemental strand, 33495317 - 33495035
Alignment:
| Q |
195 |
catggagagggtcatgaacatggccatgatagcagcagcagtgacagtgattagatcttaatttcactgcttcatcatgttgagaggtaattaaaatttt |
294 |
Q |
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| T |
33495317 |
catggagagggtcatgaacatggtcatgatagcagcagcagtgacagtgattagatcttaatttcactgcttcatcatgttgagaggtaattaaaatttt |
33495218 |
T |
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| Q |
295 |
gttttgctttatgacccttttatcagaattttacgtgattactatatataa-ttcgttactaacatgaatgtctatccgcttttttgtatcaaaattaat |
393 |
Q |
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| T |
33495217 |
gttttgctttatgacccttttatcagaattttacgtgattactatatataatttcgttactaacatgaatgtctatccgcttttttgtatcaaaattaat |
33495118 |
T |
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| Q |
394 |
aatacaagtttcaaaattttatcttagattgttnnnnnnnnntcaattatttgattggaaatgaatgaaaaatagttgcacacaa |
478 |
Q |
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| T |
33495117 |
aatacaagtttcaaaattttatctttgattgtt--aaaaaaatcaattatttgattggaaatgaatgaaaaatagttgcacacaa |
33495035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 33495492 - 33495348
Alignment:
| Q |
20 |
tgtaggaggacatggtggtgagcacaaaggagagcaacatggatttggtcatggagaccacaaggaaggacaccatggagaagagcacaaggagggattt |
119 |
Q |
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| T |
33495492 |
tgtaggaggacatggtggtgagcacaaaggagagcaacatggatttggtcatggagaccacaaggaaggacaccatggggaagagcacaaggagggattt |
33495393 |
T |
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| Q |
120 |
gttgacaagatcaaggacaagattcatggtgaaggtgcagatggt |
164 |
Q |
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| T |
33495392 |
gttgacaagatcaaggacaagattcatggtgaaggtgcagatggt |
33495348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 253
Target Start/End: Original strand, 9757719 - 9757748
Alignment:
| Q |
224 |
tagcagcagcagtgacagtgattagatctt |
253 |
Q |
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| T |
9757719 |
tagcagcagcagtgacagtgattagatctt |
9757748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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