View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7016_high_5 (Length: 386)
Name: NF7016_high_5
Description: NF7016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7016_high_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 4411749 - 4411524
Alignment:
| Q |
1 |
ttgcaattgcaacaaacaccaacatcaacgtcaacatcattttcaatgttatctccattataacttgaggtgnnnnnnnaaagaaaacaaattcttgtgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4411749 |
ttgcaattgcaacaaacaccaacatcaacgacaacatcattttcaatgttatctccattataacttgaggtgtttttttaaagaaaacaaattcttgtgg |
4411650 |
T |
|
| Q |
101 |
catagctaaggcgtgtgtgtacttatttatacaaagagattgaaattctaacatatactcaaaattggaaaaaattgtccattaattgtgttcaaatctt |
200 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4411649 |
catagctaag-catgtgtgtacttatttatacaaagagattgaaattctaacatatactcaaaattggaaaaaattgtccattaattgtgttcaaatctt |
4411551 |
T |
|
| Q |
201 |
gaaattttacattttatcacattaagc |
227 |
Q |
| |
|
|||||| |||||||||||||||||||| |
|
|
| T |
4411550 |
gaaattatacattttatcacattaagc |
4411524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 266 - 363
Target Start/End: Complemental strand, 4411485 - 4411388
Alignment:
| Q |
266 |
gtttaaagatattgactattttttactagttaaagaataaacttaatctataaaaaatatatttattgatttataattaataattgattgatttgtac |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4411485 |
gtttaaagatattgactattttttactagttaaagaataaacttactctataaaaaatatatttattgatttataattaataattgattgattggtac |
4411388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University