View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7016_high_6 (Length: 361)
Name: NF7016_high_6
Description: NF7016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7016_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 353
Target Start/End: Original strand, 9475618 - 9475952
Alignment:
| Q |
19 |
aactgggactccaactccactgatcatgtttatgtgatcgctcggcgcataagtgctcgaaaattaaatattgattgccacgtgaagcttgttgctatgt |
118 |
Q |
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| T |
9475618 |
aactgggactccaactccactgatcatgtttatgtgatcgctcggcgcataagtgctcgaaaattaaatattgattgccacgtgaagcttgttgctatgt |
9475717 |
T |
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| Q |
119 |
catcagctcctgcttttatctctcagagtgatctacaccatttttcttacgcggaaattcacggaatgctaagctatggatttgaactttcgtggatgac |
218 |
Q |
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| T |
9475718 |
cagcagctcctgcttttatctctcggagtgatcaacaccatttttcttacgcggaaattcacggaatgctaagctatggatttgaaatttcgtggattac |
9475817 |
T |
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| Q |
219 |
acgtgcttgtgaagatttttgtgacttaaaacaacaagactgctacatgggtctaattacaaccggatctttgatatgtctaagtcgtgcttgcactgct |
318 |
Q |
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| T |
9475818 |
acgtgcttgtgaagatttttgtgacttaaaacgacaagactgctccatggatcgaattaacaccggacctttgatatgtctaagtcgtgtttgcactgct |
9475917 |
T |
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| Q |
319 |
ccattcggatacaacatcttatgtggtaagtataa |
353 |
Q |
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| T |
9475918 |
ccattcggatacaacatcttatgtggtaagtataa |
9475952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 9307326 - 9307382
Alignment:
| Q |
187 |
ctaagctatggatttgaactttcgtggatgacacgtgcttgtgaagatttttgtgac |
243 |
Q |
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| T |
9307326 |
ctaagctatggatttgaactttcgtggatgagacgtggttgtgaagatcattgtgac |
9307382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 79 - 267
Target Start/End: Complemental strand, 9168179 - 9167991
Alignment:
| Q |
79 |
aaattaaatattgattgccacgtgaagcttgttgctatgtcatcagctcctgcttttatctctcagagtgatctacaccatttttcttacgcggaaattc |
178 |
Q |
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| T |
9168179 |
aaattgaatgttggttgccgcgtgaagcttgttactatgtcatcagctttagcttttatctccaagaaagattttcaacctttttcatatgtggaaattc |
9168080 |
T |
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| Q |
179 |
acggaatgctaagctatggatttgaactttcgtggatgacacgtgcttgtgaagatttttgtgacttaaaacaacaagactgctacatg |
267 |
Q |
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| T |
9168079 |
atcgatttctaagctatggatttgaactttcgtggataagacaaccttgtgaagattcttgtgacatgaaccaacaaaactgctacatg |
9167991 |
T |
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