View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7016_low_1 (Length: 564)

Name: NF7016_low_1
Description: NF7016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7016_low_1
NF7016_low_1
[»] chr8 (2 HSPs)
chr8 (418-490)||(12933811-12933883)
chr8 (441-478)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (418-490)||(14177081-14177153)
chr4 (418-532)||(28608680-28608794)
chr4 (426-479)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (411-448)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (411-448)||(796698-796735)
chr6 (411-448)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (411-448)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 490
Target Start/End: Original strand, 12933811 - 12933883
Alignment:
Q  418 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttga 490  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||||    
T  12933811 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttga 12933883  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 478
Target Start/End: Original strand, 36999937 - 36999974
Alignment:
Q  441 catggagatttggaagaggagatttatatggagcaacc 478  Q
    ||||| || |||||||||||||||||||||||||||||    
T  36999937 catggtgacttggaagaggagatttatatggagcaacc 36999974  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 490
Target Start/End: Original strand, 14177081 - 14177153
Alignment:
Q  418 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttga 490  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||||    
T  14177081 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttga 14177153  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 418 - 532
Target Start/End: Complemental strand, 28608794 - 28608680
Alignment:
Q  418 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 516  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  ||||||||||||||| ||| || || ||||| | ||| |||| |    
T  28608794 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggattt-aagaagactcgaaaggagcacttggttt 28608696  T
Q  517 gcaaattgaataagag 532  Q
    |||||||||| |||||    
T  28608695 gcaaattgaagaagag 28608680  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 479
Target Start/End: Original strand, 20706182 - 20706234
Alignment:
Q  426 aaaactgcatttcttcatggagatttggaagaggagatttatatggagcaacca 479  Q
    |||| ||||||||| ||||||||||| ||| |||||| ||||||||||||||||    
T  20706182 aaaaatgcatttctacatggagatttagaaaaggaga-ttatatggagcaacca 20706234  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 448
Target Start/End: Original strand, 6692086 - 6692123
Alignment:
Q  411 gagcagttggatgtgaaaactgcatttcttcatggaga 448  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  6692086 gagcagttagatgtgaagactgcatttcttcatggaga 6692123  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 448
Target Start/End: Complemental strand, 796735 - 796698
Alignment:
Q  411 gagcagttggatgtgaaaactgcatttcttcatggaga 448  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  796735 gagcagttagatgtgaagactgcatttcttcatggaga 796698  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 448
Target Start/End: Original strand, 8273092 - 8273129
Alignment:
Q  411 gagcagttggatgtgaaaactgcatttcttcatggaga 448  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  8273092 gagcagttagatgtgaagactgcatttcttcatggaga 8273129  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 448
Target Start/End: Original strand, 19944036 - 19944073
Alignment:
Q  411 gagcagttggatgtgaaaactgcatttcttcatggaga 448  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  19944036 gagcagttagatgtgaagactgcatttcttcatggaga 19944073  T

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