View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7016_low_10 (Length: 282)
Name: NF7016_low_10
Description: NF7016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7016_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 10 - 281
Target Start/End: Complemental strand, 24655320 - 24655049
Alignment:
| Q |
10 |
agatgaatactatgctgcctacttttaattatttggacaaaccgtgtaaaaagatgaattggtccatatgtgttcccttgctatgccagaaagttttatc |
109 |
Q |
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| T |
24655320 |
agatgaatactatactgcctacttttaattatttggacaaaccgtgtaaaaagatgaattggtccatatgtgttcccttgctatgccagaaagttttatc |
24655221 |
T |
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| Q |
110 |
tttcaagtttcaaagccacttgccataattgtttgtcatcattagtgttctattaaactgtttttgacacacatcctttttacagccaaagaatttggtg |
209 |
Q |
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| T |
24655220 |
tttcaagtttcaaagccacttgccataattgtttgtcatcattagtgttctattaaactgtttttgacacacatcctttttacagccaatgaatttggtg |
24655121 |
T |
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| Q |
210 |
ggtttgactaatatgtgatggtagggtttcagtaattgtggtagcgaaaaatataacgcgatccatgtctgt |
281 |
Q |
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| T |
24655120 |
ggtttgactaatatgtgatggtagggtttcagtaattgtggtagcgaaaaatataacgcgatccatgtctgt |
24655049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 107 - 266
Target Start/End: Complemental strand, 24683515 - 24683356
Alignment:
| Q |
107 |
atctttcaagtttcaaagccacttgccataatt-gtttgtcatcattagtgttctattaaactgtttttgacacacatcctttttacagccaaagaattt |
205 |
Q |
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| T |
24683515 |
atctttcaagtttcaaagccacttgccataattaggttgtcatcattactgttccattaaactattttc-acacacatcctttttacagccaatgaattt |
24683417 |
T |
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| Q |
206 |
ggtgggtttgactaatatgtgatggtagggtttcagtaattgtggtagcgaaaaatataac |
266 |
Q |
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| T |
24683416 |
ggtggattagactaacctgtgatggttgagtttcaataaatgtagaagcaaaaaagataac |
24683356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 24683620 - 24683544
Alignment:
| Q |
25 |
tgcctacttttaattatttggacaaaccgtgtaaaaagatgaattggtccatatgtgttcccttgctatgccagaaa |
101 |
Q |
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|||||||| ||||| |||||||||||| |||| |||||||||||||||||||| |||||||| |||||||||||| |
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| T |
24683620 |
tgcctactgttaatactttggacaaaccctgtacaaagatgaattggtccatattagttccctttctatgccagaaa |
24683544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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