View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7016_low_13 (Length: 275)
Name: NF7016_low_13
Description: NF7016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7016_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 41785759 - 41785514
Alignment:
| Q |
18 |
agtaaccacaacaatgtaactaggttcatggatggatatttcattacaacatgttcagaagcttaatttagctttacactgtaattgttcaatacatatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41785759 |
agtaaccacaacaatgtaactaggttcatggatggatatttcattacaacatgttcagaagcttaatttagctttacactgtaattgttcaatacatatt |
41785660 |
T |
|
| Q |
118 |
ataaacatcagttaaatagttacacaatcaccttcttgtgctgctttctgtacatggcagtccatgtgagctttgaaggcttcaacttgttgtggaaata |
217 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41785659 |
acaaacatcagttaaatagttacacaatcaccttcttgtgttgctttctgtacatggcagtccatgtgagttttgaaggcttcaacttgttgtggaaata |
41785560 |
T |
|
| Q |
218 |
tctcttacattttgagttcacaaagaggaaaacctgtaaaaacaat |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41785559 |
cctcttacattttgagttcacaaagaggaaaacctgtaaaaacaat |
41785514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 41790207 - 41790068
Alignment:
| Q |
18 |
agtaaccacaacaatgtaactaggttcatggatggatatttcattacaacatgttcagaagcttaatttagctttacactgtaattgttcaatacatatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41790207 |
agtaaccacaacaatgtaactaggttcatggatggatatttcattacaacatgttcagaagcttaatttagctttacactgtaattgttcaatacatatt |
41790108 |
T |
|
| Q |
118 |
ataaacatcagttaaatagttacacaatcaccttcttgtg |
157 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41790107 |
acaaacatcagttaaatagttacacaatcaccttcttgtg |
41790068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 145 - 259
Target Start/End: Original strand, 26937028 - 26937142
Alignment:
| Q |
145 |
tcaccttcttgtgctgctttctgtacatggcagtccatgtgagctttgaaggcttcaacttgttgtggaaatatctcttacattttgagttcacaaagag |
244 |
Q |
| |
|
||||||||||||| ||||| || ||||||||||||||||| |||||||| ||||||||||||||||||||||| || |||||||| ||||| ||||| || |
|
|
| T |
26937028 |
tcaccttcttgtgttgcttcctatacatggcagtccatgtaagctttgagggcttcaacttgttgtggaaataccttttacatttcgagttgacaaacag |
26937127 |
T |
|
| Q |
245 |
gaaaacctgtaaaaa |
259 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
26937128 |
gaaaacctggaaaaa |
26937142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 253
Target Start/End: Complemental strand, 43474137 - 43474053
Alignment:
| Q |
168 |
tacatggcagtccatgtgagctttgaaggcttcaacttgttgtggaaatatctcttacattttgagttcacaaagaggaaaacctg |
253 |
Q |
| |
|
|||||||||||||| || | |||||||| ||||||| |||||||||| || ||||| |||| ||||| || || ||||||||||| |
|
|
| T |
43474137 |
tacatggcagtccaggtaaactttgaag-cttcaacctgttgtggaagtaactcttttatttggagttgaccaacaggaaaacctg |
43474053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University