View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7016_low_14 (Length: 271)
Name: NF7016_low_14
Description: NF7016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7016_low_14 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 271
Target Start/End: Original strand, 31320245 - 31320500
Alignment:
| Q |
16 |
attgtacacaagaaggattccaaaatcaagtattaagaaaagggtgccaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatca |
115 |
Q |
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| T |
31320245 |
attgtacacaagaaggattccaaaatcaagtattaagaaaagggtgccaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatca |
31320344 |
T |
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| Q |
116 |
ttattgtggttcatgtggttatggttgtccaaaaggtgagaaacaagggactcaagctacatggcttgtagatgctgttgaaaaagatgctgtgataata |
215 |
Q |
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| T |
31320345 |
ttattgtggttcatgtggttatggttgtccaaagggagagaaacaagggactcaagctacatggcttgtagatgctgttgataaaggtgctgtgattata |
31320444 |
T |
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| Q |
216 |
acaggatgcaaagctgagagattcttgtttgataataattataagaataccaatac |
271 |
Q |
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| T |
31320445 |
acaggatgtaaagctgagagattcttgtttgaaaataattataggaatgccaatac |
31320500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 16 - 271
Target Start/End: Original strand, 31332498 - 31332753
Alignment:
| Q |
16 |
attgtacacaagaaggattccaaaatcaagtattaagaaaagggtgccaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatca |
115 |
Q |
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| T |
31332498 |
attgtacacaagaaggattccaaaatcaagtattaagaaaagggtgtcaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatca |
31332597 |
T |
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| Q |
116 |
ttattgtggttcatgtggttatggttgtccaaaaggtgagaaacaagggactcaagctacatggcttgtagatgctgttgaaaaagatgctgtgataata |
215 |
Q |
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| T |
31332598 |
ttattgtggttcatgtggttatggttgtccaaagggagagaaacaagggactcaagctacatggcttgtagatgctgttgataaaggtgctgtgattata |
31332697 |
T |
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| Q |
216 |
acaggatgcaaagctgagagattcttgtttgataataattataagaataccaatac |
271 |
Q |
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| T |
31332698 |
acaggatgtaaagctgagagattcttgtttgaaaataattataggaatgccaatac |
31332753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 16 - 271
Target Start/End: Complemental strand, 3425 - 3170
Alignment:
| Q |
16 |
attgtacacaagaaggattccaaaatcaagtattaagaaaagggtgccaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatca |
115 |
Q |
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| T |
3425 |
attgtacacaagaaggattccaaaatcaagtattaagaaaagggtgtcaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatca |
3326 |
T |
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| Q |
116 |
ttattgtggttcatgtggttatggttgtccaaaaggtgagaaacaagggactcaagctacatggcttgtagatgctgttgaaaaagatgctgtgataata |
215 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||| |
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| T |
3325 |
ttattgtggttcatgtggttatggttgtccaaagggagagaaacaagggactcaagctacatggcttgtagatgctgttgataaaggtgctgtgattata |
3226 |
T |
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| Q |
216 |
acaggatgcaaagctgagagattcttgtttgataataattataagaataccaatac |
271 |
Q |
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| T |
3225 |
acaggatgtaaagctgagagattcttgtttgaaaataattataggaatgccaatac |
3170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 232
Target Start/End: Complemental strand, 33522105 - 33521947
Alignment:
| Q |
79 |
aagttgattatgtgccaagaaattcaccagggaatcattattgtggttcatgtggttatggttgtccaaaaggtga-----gaaacaagggactcaagct |
173 |
Q |
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|||| ||||||||||| ||||||||| ||| | ||||||| |||||||| ||| ||||||||| ||||||| || ||||||||||| | | | |
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| T |
33522105 |
aagtcgattatgtgccgagaaattcatcagagcatcattactgtggttcttgtaactatggttgtacaaaaggagataaacaaaacaagggaccgatgtt |
33522006 |
T |
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| Q |
174 |
acatggcttgtagatgctgttgaaaaagatgctgtgataataacaggatgcaaagctga |
232 |
Q |
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| T |
33522005 |
acatggcttgtcgatgctgtggaacacggtgctgtaatactaacaagatgcaaagctga |
33521947 |
T |
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