View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7016_low_15 (Length: 268)
Name: NF7016_low_15
Description: NF7016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7016_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 10 - 252
Target Start/End: Complemental strand, 41209507 - 41209273
Alignment:
| Q |
10 |
ggattgatcaacaacattcatactttgatttctctgaatggaatgagaagactcttctcaagcttggaatctaaaccaaggatacgagatgcacgttgaa |
109 |
Q |
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| T |
41209507 |
ggattgatcaacaacattcatactttgatttctctaaatggaatgagaagactcttctcaagcttggaatctaaaccaaggatacgagatgcacgttgaa |
41209408 |
T |
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| Q |
110 |
aattacggtttgtggctgctaaagcattcatagttgatcaaaacaataaaacagtgaaagagtgaagtgtgttgatgaattaagaaaattgtgatgcaat |
209 |
Q |
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| T |
41209407 |
aattacggtttgtggctgctaaagcattcatagttgatcaaaacaataaaacag--------tgaagtgtgttgatgaattaagaaaattgtgatgcgat |
41209316 |
T |
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| Q |
210 |
gaaaagaaaacgcatcaattgttgtgattttataggttaaaga |
252 |
Q |
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| T |
41209315 |
gaaaagaaaacgcatcaattgttgtgattttataggttaaaga |
41209273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 34 - 125
Target Start/End: Original strand, 4275067 - 4275158
Alignment:
| Q |
34 |
ttgatttctctgaatggaatgagaagactcttctcaagcttggaatctaaaccaaggatacgagatgcacgttgaaaattacggtttgtggc |
125 |
Q |
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| T |
4275067 |
ttgatttctctgtaaggaatgagaaggcttttctcaagtttggaatccaaaccaaggattcgagatgcacgttggaaattacggttggtggc |
4275158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 33196368 - 33196322
Alignment:
| Q |
34 |
ttgatttctctgaatggaatgagaagactcttctcaagcttggaatc |
80 |
Q |
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| T |
33196368 |
ttgatttctctgaatggaataagtaaacttttctcaagcttggaatc |
33196322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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