View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7016_low_16 (Length: 259)
Name: NF7016_low_16
Description: NF7016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7016_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 55246881 - 55247108
Alignment:
| Q |
18 |
tttataatgttttagtcttgatacaacgcaataatgatgattctttcaattaaaggaaggacattgagaagatgttaatgtttcggttagttgtcatttt |
117 |
Q |
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| T |
55246881 |
tttataatgttttagtcttgatacaacgcaataatgatgattctttcaattgaaggaaggacattgagaagatgttaatgtttcggttagttgtcatttt |
55246980 |
T |
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| Q |
118 |
ggtccttaacaatgtggtatcataatggagttaagaaacaacaattctcatatatgt-nnnnnnnncttgatacttgagcgaaacttaccaaaaattgga |
216 |
Q |
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| T |
55246981 |
ggtccttaacaatgtggtatcataatggagttaagaaacaacaattctcatatatgtaaaaaaaaacttgatacttgagcgaaacttaccaaaaattgga |
55247080 |
T |
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| Q |
217 |
agtcaattaacgacaagggagcagagca |
244 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
55247081 |
agtcaattaacgacaagggagcagagca |
55247108 |
T |
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