View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7016_low_18 (Length: 250)
Name: NF7016_low_18
Description: NF7016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7016_low_18 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 53933664 - 53933902
Alignment:
| Q |
12 |
atgaacatacaatggttgtacataataaaagaatataacaaggacatgtcttaaaaattaaagagtgaatattttgacattaatatgagcatgaattgac |
111 |
Q |
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| T |
53933664 |
atgaacatacaatggttgtacataataaaagaatataacatggacatgtcttaaaaattaaagagtgaatattttgacatgaatatgagcatgaattgac |
53933763 |
T |
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| Q |
112 |
gataaggaccaaaaacataacaaaattttgtgagaactaaaacatcggattcttgttctaaagattaaaattaaaattcactatatttctagtaacaaca |
211 |
Q |
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||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53933764 |
gataaggaccaaaaacaaaacaaaattttgcgagaacgaaaacatcggattcttgttctaaagattaaaattaaaattcactatatttctagtaacaaca |
53933863 |
T |
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| Q |
212 |
aatttatttatcatattttcttttataattcttttaatt |
250 |
Q |
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| T |
53933864 |
aatttatttatcatattttcttttataattctattaatt |
53933902 |
T |
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