View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7016_low_2 (Length: 549)
Name: NF7016_low_2
Description: NF7016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7016_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 10 - 437
Target Start/End: Complemental strand, 41785491 - 41785065
Alignment:
| Q |
10 |
aataaaactaacattgaccaaatcaaagcaaacacacaactgatattcattcaaataaagaaatgaatcaacccataattcaacatggctcatttttatc |
109 |
Q |
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| T |
41785491 |
aataaaactaatattgaccaaatcaaagcaaacacacaactgatattcattcaaataaagaaatgaatcaacccataattcaacatggctcatttttatc |
41785392 |
T |
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| Q |
110 |
tcacctgagaatcactacgaataaatctgatccctcttcctgggtaaatctttgcgccactgaatcgacagagttcagttctgaaatggaaacatcaatt |
209 |
Q |
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| T |
41785391 |
tcacctgagaatcactacgaataaatctgatccctcttcctgggtaaatctttgcaccactgaatctgcagagttcagtcctgaaatggaaatatcaatt |
41785292 |
T |
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| Q |
210 |
actaacttttccacacaagagtgc----aataaattcaaaacacaactcactagttcaatcaaaatgcaataacagtgaatggtcttctaatagctaatt |
305 |
Q |
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| T |
41785291 |
actaactttcccacacaaggatgcaataaataaattgaaaacacaac-cactaattcaataaaaatgcaataacagtgaatggtc----cagaatcaact |
41785197 |
T |
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| Q |
306 |
atttccaacattcttaaaagttacgcatcatatctaatgtacttcgaatagctaatttaaagaataacattatcagatttcaaaagccactcgttaaaaa |
405 |
Q |
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| T |
41785196 |
atttccaacattcttcaaagttaagcatcatatctgatacacttctaatagctaatttaaagaacaacattatcagatttcaaaagccactcattaaaaa |
41785097 |
T |
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| Q |
406 |
ttgaaattgcacaaggaaaaaggttccaaaaa |
437 |
Q |
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| T |
41785096 |
ttgaaattgcacaaggaaacaagttccaaaaa |
41785065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 279 - 437
Target Start/End: Complemental strand, 41789681 - 41789523
Alignment:
| Q |
279 |
cagtgaatggtcttctaatagctaattatttccaacattcttaaaagttacgcatcatatctaatgtacttcgaatagctaatttaaagaataacattat |
378 |
Q |
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| T |
41789681 |
cagtgaatggtcttctaatagctaattatttccaacattcttaaaagttacgcatcatatctaatgtacttcgaatagctaatttaaagaataacattat |
41789582 |
T |
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| Q |
379 |
cagatttcaaaagccactcgttaaaaattgaaattgcacaaggaaaaaggttccaaaaa |
437 |
Q |
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| T |
41789581 |
cagatttcaaaagccactcattaaaaattgaaattgcacaaggaaacaagttccaaaaa |
41789523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 47 - 209
Target Start/End: Complemental strand, 41789844 - 41789682
Alignment:
| Q |
47 |
aactgatattcattcaaataaagaaatgaatcaacccataattcaacatggctcatttttatctcacctgagaatcactacgaataaatctgatccctct |
146 |
Q |
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| T |
41789844 |
aactggtattcattcaaataaagaaatgcatcaatccaaaatccaacatgagtcatttttatctcacctgagaatcactacgaataaatctgatccctct |
41789745 |
T |
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| Q |
147 |
tcctgggtaaatctttgcgccactgaatcgacagagttcagttctgaaatggaaacatcaatt |
209 |
Q |
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| T |
41789744 |
tcctgggtaaatctttgcgccactgaatcgacagagttcagttctgaaatggaaacatcaatt |
41789682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 467 - 541
Target Start/End: Complemental strand, 41789164 - 41789090
Alignment:
| Q |
467 |
aaacttacttgagaaccatggctgcttcgttgctgtggtggctgctctttgtaaatgtaaacccgttttcatctc |
541 |
Q |
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| T |
41789164 |
aaacttacttgagaaccatggctgcttcgtcgctgtggtggctgctctttgtaaatgtaaacccgttttcatctc |
41789090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 467 - 530
Target Start/End: Complemental strand, 41784715 - 41784652
Alignment:
| Q |
467 |
aaacttacttgagaaccatggctgcttcgttgctgtggtggctgctctttgtaaatgtaaaccc |
530 |
Q |
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| T |
41784715 |
aaacttacttgagaaccatggctgcttcgttggtgtggtggctgctccttgtaaatgtaaaccc |
41784652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 26937236 - 26937309
Alignment:
| Q |
103 |
ttttatctcacctgagaatcactacgaataaatctgatccctcttcctgggtaaatctttgcgccactgaatcg |
176 |
Q |
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| T |
26937236 |
ttttatattacctgagaatcactacggataaatctgatccccctaccagggtagatcttggcaccactgaatcg |
26937309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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