View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7016_low_22 (Length: 242)
Name: NF7016_low_22
Description: NF7016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7016_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 10067463 - 10067687
Alignment:
| Q |
1 |
cagctccagcccatgctgtctcagttaatataccagaagtgcttgttacttcattgaacaacgtatagattcgcataagtcttggcgcgtattgtgttat |
100 |
Q |
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| T |
10067463 |
cagctccagcccatgctgtctcagttaatataccagaagtgcttgttacttcattgaacaacgtatagattcgcataagtcttggcgcgtattgtgttat |
10067562 |
T |
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| Q |
101 |
tatcgtatacttcaaccaatcctttgttatatatggaactgagccttgtggaattggaatcatagctaaaatcaccatctaataacacagcattaaaatg |
200 |
Q |
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| T |
10067563 |
tatcgtatacttcaaccaatcctttgttatatatggaactgagccttgtggaattggaatcatagctaaaatcaccatctaataacacagcattaaaatg |
10067662 |
T |
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| Q |
201 |
ttaaaacaacatcatagtattatgt |
225 |
Q |
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| T |
10067663 |
ttaaaacaacatcatagtattatgt |
10067687 |
T |
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Back To:
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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 48464696 - 48464639
Alignment:
| Q |
1 |
cagctccagcccatgctgtctcagttaatataccagaagtgcttgttacttcattgaa |
58 |
Q |
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|||||||||||||||||||||| || ||||| || ||||| || |||||||| ||||| |
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| T |
48464696 |
cagctccagcccatgctgtctctgtcaatatgcctgaagttctagttacttctttgaa |
48464639 |
T |
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