View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7016_low_24 (Length: 241)
Name: NF7016_low_24
Description: NF7016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7016_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 41715887 - 41716105
Alignment:
| Q |
1 |
acatcaaatattgtaaccaaggtttcactaccattgtggatgcaatacaattttacaagttacaatgcgtttctatccattttggggtgatcgccccaaa |
100 |
Q |
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| T |
41715887 |
acatcaaatattgtaaccaaggtttcactaccattgtggatgcaatacaattttacaagttacaatgcgtttctatccattttggggtgatcgccccaaa |
41715986 |
T |
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| Q |
101 |
tggattcaccatttcctcattctctttagggtacaccctctccctttcacaaagcatttgtatcaatgatgcatggttgatccaactcgagggagaagca |
200 |
Q |
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| T |
41715987 |
tggattcaccatttcctcattctctttagggtacaccctctccctttcacaaagcatttgtatcaatgatgcatggttgatccaactcgagggagaagca |
41716086 |
T |
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| Q |
201 |
caatttgctgtgacccaaa |
219 |
Q |
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| T |
41716087 |
caatttgctgtgacccaaa |
41716105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 41706087 - 41706306
Alignment:
| Q |
4 |
tcaaatattgtaaccaaggtttcactaccattgtggatgcaatacaattttacaagttacaatgcgtttctatccattttggggtgatcgccccaaatgg |
103 |
Q |
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| T |
41706087 |
tcaaatattgtaaccaaagttgcgctacccgtgtagatgctatactattttacaagctacaatgggtttctatccattttgcagtgatcgccccagatgg |
41706186 |
T |
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| Q |
104 |
attcaccatttcctcattctctttagggtacaccctctccctttcacaaagcatttgtatcaatgatgcatggttgatccaactcgagggagaagcacaa |
203 |
Q |
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| T |
41706187 |
cttcaccatttcctccttctttttagggtacaccttcaccctttcacaaagcttgcgtatcaatgatgcatggttgatgtaactcgatggagaagaacaa |
41706286 |
T |
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| Q |
204 |
tttgctgtgacccaaaggtc |
223 |
Q |
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| T |
41706287 |
ttggctgtgacccaaaggtc |
41706306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 41648162 - 41648224
Alignment:
| Q |
162 |
atcaatgatgcatggttgatccaactcgagggagaagcacaatttgctgtgacccaaaggtct |
224 |
Q |
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| T |
41648162 |
atcaatgatgcatggttgatccaactcgaggaagaagaagaattttccgtgacccaaaggtct |
41648224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 41656194 - 41656244
Alignment:
| Q |
105 |
ttcaccatttcctcattctctttagggtacaccctctccctttcacaaagc |
155 |
Q |
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| T |
41656194 |
ttcacaatttcctcattcttttcatggtacaccctcaccctttcacaaagc |
41656244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 176
Target Start/End: Complemental strand, 2440948 - 2440842
Alignment:
| Q |
70 |
tttctatccattttggggtgatcgccccaaatggattcaccatttcctcattctctttagggtacaccctctccctttcacaaagcatttgtatcaatga |
169 |
Q |
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||||||||||||| | |||||| | |||| |||| ||||| ||||||||||||| || |||||||||||| ||| |||||||||| | | |||||||| |
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| T |
2440948 |
tttctatccatttcgcggtgattggcccagatggcttcacaatttcctcattcttttccgggtacaccctcacccattcacaaagcttgttgatcaatga |
2440849 |
T |
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| Q |
170 |
tgcatgg |
176 |
Q |
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||||||| |
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| T |
2440848 |
tgcatgg |
2440842 |
T |
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