View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7016_low_4 (Length: 472)
Name: NF7016_low_4
Description: NF7016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7016_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 19 - 464
Target Start/End: Complemental strand, 10067437 - 10066992
Alignment:
| Q |
19 |
agcaagtcatgtaagcttgtaattttgttacttctgtcacaagcattagtttatgtatgttccttgttactataagctaagttttatgataaaaaatcca |
118 |
Q |
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| T |
10067437 |
agcaagtcatgtaagcttgtaattttgttacttctgtcacaagcattagtttatgtatgttccttgttactataagctaagttttatgataaaaaatcca |
10067338 |
T |
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| Q |
119 |
aattatttgtgatattaggttgttggagcattttggtatgtgttttcaatagaatcagagttgcggtgttggcgcagacggttgaagaatactccattct |
218 |
Q |
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| T |
10067337 |
aattatttgtgatattaggttgttggagcattttggtatttgttttcaatagaatcagagttgcggtgttggcgcagacggttgaagaatactccgttct |
10067238 |
T |
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| Q |
219 |
ttgatgattcctatctgagctgcggacgagtcaattcgacacttttttcaattctcaacaattctgctacttgtccttacaaagatcctgatgatatcat |
318 |
Q |
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| T |
10067237 |
ttgatgattcctatctgagctgtggacgagtcaattcgacacttttttcaattctcaacaattctgctacttgtccttacaaagatcctgatgatatcat |
10067138 |
T |
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| Q |
319 |
tgacccaacagttttcaattttggaatatttatggatgctctaacgtctcgtgtggtggagttgaatacaaactttcatcataaattcttctactgcttt |
418 |
Q |
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| T |
10067137 |
tgacccaacagttttcaattttggaatatttatggatgctctaacgtctcgtgtggtggagttgaatacaaactttcatcataaattcttctactgcttt |
10067038 |
T |
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| Q |
419 |
tggtggggtttgcgcaatttgaggttggttgttgatcttctctgct |
464 |
Q |
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| T |
10067037 |
tggtggggtttgcgcaatttgaggttggttgttgatcttctctgct |
10066992 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 404 - 447
Target Start/End: Original strand, 48465104 - 48465147
Alignment:
| Q |
404 |
ttcttctactgcttttggtggggtttgcgcaatttgaggttggt |
447 |
Q |
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| T |
48465104 |
ttcttctactgcttttggtggggtttgcgaaatttaaggttggt |
48465147 |
T |
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