View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7016_low_7 (Length: 321)
Name: NF7016_low_7
Description: NF7016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7016_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 15688758 - 15689065
Alignment:
| Q |
1 |
gatttcttctaggtttgtgttcaccatgtttgagtttctttctttggcaacaactcaacagatgagaaattgtctttggctttttgggatattgtacagt |
100 |
Q |
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| T |
15688758 |
gatttcttctaggtttgtgttcaccatgtttgagtttctttctttgacaacaactcaacagaggagatattgtctttggctttttgggatattgtacagt |
15688857 |
T |
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| Q |
101 |
gatgtctttgtctctccaattttaaaataagccaaaaaagaatgatctaaactgtaacaagaattaggtagtagtggactagaagtattggtgaattaga |
200 |
Q |
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| T |
15688858 |
gatgtctttgtctctccaattttaaaataagccaaaaaagaatgatctaaactgtaacaggaattaggtagtagtgaactagaagtattggtcaattaga |
15688957 |
T |
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| Q |
201 |
ttatgggaaataaaatattaaatctagtgcaggccatgactgctaaataacataaaataatctatattcatcaataatctatttctaaaaatagtgtctg |
300 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | |
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| T |
15688958 |
ttatgggaaataaaattttaaatctagtgcaggccatgactgctaaataacataaaataatctattttcatcaataatctatttctaaaaatagtggccg |
15689057 |
T |
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| Q |
301 |
atattgat |
308 |
Q |
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|||||||| |
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| T |
15689058 |
atattgat |
15689065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 15684462 - 15684570
Alignment:
| Q |
1 |
gatttcttctaggtttgtgttcaccatgtttgagtttctttctttggcaacaactcaacagatgaga-aattgtc-tttggctttttgggatattgtaca |
98 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||| | |||||| |||||||||||| | ||||| |||| ||||||||| |||||||| |
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| T |
15684462 |
gatttcttctagatttgtgttccccatgtttgagtttctttcttggacaacaaaacaacagatgagatatttgtcttttgtttttttgggaaattgtaca |
15684561 |
T |
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| Q |
99 |
gtgatgtct |
107 |
Q |
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| T |
15684562 |
atgatgtct |
15684570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 249
Target Start/End: Original strand, 15689128 - 15689156
Alignment:
| Q |
221 |
aatctagtgcaggccatgactgctaaata |
249 |
Q |
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| T |
15689128 |
aatctagtgcaggccatgactgctaaata |
15689156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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