View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7016_low_8 (Length: 299)
Name: NF7016_low_8
Description: NF7016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7016_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 3 - 284
Target Start/End: Original strand, 44146379 - 44146654
Alignment:
| Q |
3 |
agatcagtaaattttcagtattagcttggaagtatttgtttgtnnnnnnnntccaatattagacatcacaaatctcgtattcaaaacttaatttcttatg |
102 |
Q |
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| T |
44146379 |
agatcagtaaatttgcagtattagcttggaagtatttgtttgtaaaaaaaatccaat------catcacaaatcccgtattcaaaacttaatttcttatg |
44146472 |
T |
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| Q |
103 |
caggaagcatacttcctatctctgagtcaaaggtcgttgaggttagtgatatagcttagattaacatacgagttttttcaactgagataagtaaagttct |
202 |
Q |
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| T |
44146473 |
caggaagcatactccctatctctgagtcaaaggtcgttgaggttagtgatatagcttagattaacatacgagttttttcaactgagataagtaaagttct |
44146572 |
T |
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| Q |
203 |
ttgtaagggtttaacacttagcagtaacaatatatcagctaatcgaagaagaactggataatctgtacttatttattgattg |
284 |
Q |
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| T |
44146573 |
ttgtaagggtttaacacttagcagtaacaatatatcagctaatcgaagaagaactggataatctgtactcatttattgattg |
44146654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 59 - 284
Target Start/End: Original strand, 40895984 - 40896209
Alignment:
| Q |
59 |
tattagacatcacaaatctcgtattcaaaacttaatttcttatgcaggaagcatacttcctatctctgagtcaaaggtcgttgaggttagtgatatagct |
158 |
Q |
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| T |
40895984 |
tattagacatcacaaatctcgtattcaaaacttaatttcttatgcaggaagcatactccctatctctgagtcaaaggtcattgaggttagtgatatagct |
40896083 |
T |
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| Q |
159 |
tagattaacatacgagttttttcaactgagataagtaaagttctttgtaagggtttaacacttagcagtaacaatatatcagctaatcgaagaagaactg |
258 |
Q |
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| T |
40896084 |
tagattaacatacgagttttttcaactgagataagtaaagttctttgtaagggtttaacacttagcagtaacaatatatcagctaatcgaagaagaactg |
40896183 |
T |
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| Q |
259 |
gataatctgtacttatttattgattg |
284 |
Q |
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|||||||| | || |||||||||||| |
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| T |
40896184 |
gataatctatgctcatttattgattg |
40896209 |
T |
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