View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7017_high_12 (Length: 512)

Name: NF7017_high_12
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7017_high_12
NF7017_high_12
[»] chr1 (33 HSPs)
chr1 (90-180)||(48527652-48527742)
chr1 (68-168)||(3617417-3617517)
chr1 (84-180)||(9226123-9226219)
chr1 (104-179)||(13147325-13147400)
chr1 (119-249)||(16964963-16965094)
chr1 (72-180)||(46318526-46318633)
chr1 (88-171)||(10711904-10711987)
chr1 (53-163)||(9482537-9482646)
chr1 (85-171)||(10722293-10722379)
chr1 (73-180)||(15072698-15072805)
chr1 (90-157)||(15746697-15746764)
chr1 (107-180)||(45584915-45584988)
chr1 (107-171)||(9485221-9485285)
chr1 (104-180)||(14478398-14478474)
chr1 (90-162)||(48096958-48097030)
chr1 (104-180)||(51445722-51445798)
chr1 (90-180)||(5612993-5613082)
chr1 (88-158)||(18821669-18821739)
chr1 (73-171)||(44999379-44999477)
chr1 (103-168)||(52078064-52078129)
chr1 (91-171)||(6049342-6049422)
chr1 (88-180)||(12665907-12665998)
chr1 (73-145)||(41873914-41873986)
chr1 (120-249)||(49801766-49801895)
chr1 (119-166)||(15232900-15232947)
chr1 (73-156)||(16123388-16123471)
chr1 (90-145)||(23091470-23091525)
chr1 (85-180)||(26286525-26286619)
chr1 (90-180)||(13894732-13894821)
chr1 (94-140)||(15233991-15234037)
chr1 (90-168)||(16963951-16964029)
chr1 (200-238)||(35943295-35943333)
chr1 (120-180)||(26802088-26802148)
[»] chr8 (27 HSPs)
chr8 (68-171)||(10669362-10669465)
chr8 (53-168)||(17455128-17455243)
chr8 (90-180)||(24192571-24192661)
chr8 (88-171)||(9854796-9854880)
chr8 (90-158)||(42872120-42872188)
chr8 (90-180)||(31845703-31845792)
chr8 (107-180)||(32798439-32798512)
chr8 (117-181)||(40437503-40437567)
chr8 (91-180)||(20180582-20180671)
chr8 (127-249)||(32695112-32695234)
chr8 (90-162)||(42877736-42877808)
chr8 (88-180)||(43202212-43202304)
chr8 (90-180)||(8571524-8571614)
chr8 (127-180)||(4810621-4810674)
chr8 (119-166)||(13117554-13117601)
chr8 (90-168)||(42362671-42362748)
chr8 (205-246)||(17455281-17455322)
chr8 (119-168)||(42098711-42098760)
chr8 (119-180)||(45281096-45281157)
chr8 (105-168)||(38696441-38696504)
chr8 (119-162)||(42878756-42878799)
chr8 (90-140)||(13116447-13116497)
chr8 (91-181)||(14840806-14840896)
chr8 (90-140)||(42100055-42100105)
chr8 (90-171)||(6397900-6397981)
chr8 (96-168)||(13513541-13513613)
chr8 (96-168)||(13603074-13603146)
[»] chr5 (21 HSPs)
chr5 (90-180)||(1102736-1102826)
chr5 (107-180)||(39603990-39604063)
chr5 (87-171)||(4127170-4127254)
chr5 (119-245)||(30910890-30911017)
chr5 (107-180)||(30859078-30859151)
chr5 (90-180)||(9220365-9220458)
chr5 (88-171)||(10735879-10735962)
chr5 (107-180)||(22047869-22047942)
chr5 (90-162)||(1010291-1010363)
chr5 (90-162)||(8521372-8521444)
chr5 (119-171)||(11262540-11262592)
chr5 (107-181)||(27705222-27705296)
chr5 (73-145)||(33173903-33173975)
chr5 (119-162)||(1009332-1009375)
chr5 (123-176)||(13520711-13520764)
chr5 (200-249)||(36898815-36898864)
chr5 (90-138)||(30857917-30857965)
chr5 (88-168)||(35081357-35081437)
chr5 (90-171)||(36898898-36898979)
chr5 (148-180)||(17420494-17420526)
chr5 (73-145)||(22308742-22308814)
[»] chr2 (23 HSPs)
chr2 (90-171)||(43033199-43033280)
chr2 (107-249)||(29219522-29219664)
chr2 (107-249)||(29332821-29332963)
chr2 (73-181)||(34467607-34467715)
chr2 (72-180)||(35903608-35903715)
chr2 (104-180)||(4920966-4921042)
chr2 (107-171)||(11317284-11317348)
chr2 (107-180)||(42641768-42641841)
chr2 (119-171)||(32469297-32469349)
chr2 (127-249)||(18616842-18616965)
chr2 (72-180)||(34464068-34464176)
chr2 (103-158)||(43034400-43034455)
chr2 (125-168)||(1085307-1085350)
chr2 (90-155)||(16295150-16295215)
chr2 (127-180)||(30748634-30748687)
chr2 (90-171)||(30749242-30749322)
chr2 (73-125)||(6032277-6032329)
chr2 (104-180)||(28611161-28611236)
chr2 (104-180)||(34513461-34513537)
chr2 (110-180)||(8320895-8320965)
chr2 (212-249)||(1085223-1085260)
chr2 (119-180)||(6030377-6030438)
chr2 (128-180)||(34512968-34513020)
[»] chr4 (34 HSPs)
chr4 (84-180)||(56085459-56085555)
chr4 (90-180)||(44498579-44498669)
chr4 (105-181)||(36845543-36845619)
chr4 (107-249)||(2312319-2312461)
chr4 (88-171)||(4871609-4871693)
chr4 (107-171)||(11968647-11968711)
chr4 (72-180)||(13165595-13165703)
chr4 (107-238)||(7707725-7707857)
chr4 (110-180)||(52138701-52138771)
chr4 (107-180)||(27850845-27850918)
chr4 (88-180)||(19750202-19750294)
chr4 (88-180)||(19789512-19789604)
chr4 (53-169)||(22069316-22069432)
chr4 (90-180)||(1519929-1520018)
chr4 (90-180)||(26629909-26629998)
chr4 (72-142)||(53435699-53435769)
chr4 (104-181)||(26496216-26496293)
chr4 (107-180)||(52240013-52240086)
chr4 (73-145)||(13166712-13166784)
chr4 (125-249)||(23202000-23202127)
chr4 (90-162)||(40723345-40723417)
chr4 (119-178)||(15449984-15450043)
chr4 (120-180)||(28590812-28590872)
chr4 (73-120)||(5591418-5591465)
chr4 (73-120)||(48126905-48126952)
chr4 (102-181)||(49896491-49896570)
chr4 (91-145)||(4714139-4714193)
chr4 (127-180)||(7053332-7053385)
chr4 (119-168)||(34326874-34326923)
chr4 (90-142)||(6348272-6348324)
chr4 (134-180)||(45535207-45535252)
chr4 (91-165)||(56157419-56157493)
chr4 (119-180)||(1794560-1794621)
chr4 (72-168)||(53432162-53432258)
[»] chr3 (26 HSPs)
chr3 (68-180)||(10338834-10338946)
chr3 (91-180)||(10301053-10301142)
chr3 (88-180)||(14745108-14745200)
chr3 (119-249)||(27841545-27841678)
chr3 (85-171)||(48083340-48083426)
chr3 (120-249)||(26886421-26886551)
chr3 (107-180)||(38242423-38242496)
chr3 (104-181)||(49379834-49379911)
chr3 (119-249)||(35371055-35371187)
chr3 (125-249)||(41264490-41264615)
chr3 (119-180)||(3208632-3208693)
chr3 (122-178)||(34819194-34819250)
chr3 (88-180)||(53194520-53194612)
chr3 (90-171)||(13621037-13621119)
chr3 (107-168)||(10732048-10732109)
chr3 (122-171)||(46368958-46369007)
chr3 (88-137)||(53612986-53613035)
chr3 (73-180)||(42684977-42685084)
chr3 (90-168)||(10731002-10731080)
chr3 (106-168)||(53614192-53614254)
chr3 (91-180)||(53420436-53420525)
chr3 (88-156)||(7270439-7270507)
chr3 (119-162)||(3455550-3455593)
chr3 (97-140)||(27838043-27838086)
chr3 (134-180)||(28909515-28909561)
chr3 (90-171)||(36175380-36175461)
[»] chr7 (27 HSPs)
chr7 (119-249)||(32255138-32255268)
chr7 (88-180)||(35295815-35295907)
chr7 (107-171)||(43460739-43460803)
chr7 (88-180)||(669297-669388)
chr7 (68-168)||(16755967-16756067)
chr7 (88-171)||(2414861-2414944)
chr7 (90-181)||(43441464-43441555)
chr7 (107-168)||(11502340-11502401)
chr7 (90-179)||(46201249-46201338)
chr7 (104-181)||(41328351-41328428)
chr7 (91-180)||(44372848-44372937)
chr7 (91-180)||(44381704-44381793)
chr7 (81-165)||(15992244-15992328)
chr7 (120-249)||(22537708-22537836)
chr7 (104-180)||(39981449-39981525)
chr7 (106-168)||(13564158-13564220)
chr7 (107-180)||(40811456-40811529)
chr7 (88-140)||(32256344-32256396)
chr7 (75-139)||(33779036-33779100)
chr7 (122-168)||(22336130-22336176)
chr7 (134-171)||(46835838-46835875)
chr7 (91-140)||(47454455-47454504)
chr7 (90-137)||(11501297-11501344)
chr7 (90-137)||(13562939-13562986)
chr7 (88-171)||(30334559-30334641)
chr7 (73-145)||(22115107-22115179)
chr7 (73-145)||(40509677-40509749)
[»] chr6 (14 HSPs)
chr6 (107-249)||(17837752-17837895)
chr6 (88-180)||(11967332-11967424)
chr6 (120-249)||(18346588-18346717)
chr6 (28-96)||(12784762-12784830)
chr6 (107-180)||(7311632-7311705)
chr6 (52-96)||(12780607-12780651)
chr6 (127-249)||(29381567-29381690)
chr6 (104-180)||(11722918-11722994)
chr6 (90-180)||(12669841-12669931)
chr6 (88-168)||(23397275-23397355)
chr6 (122-181)||(23392365-23392424)
chr6 (119-180)||(5187529-5187590)
chr6 (73-147)||(32506967-32507041)
chr6 (72-171)||(15728830-15728929)
[»] scaffold0077 (1 HSPs)
scaffold0077 (107-180)||(54091-54164)
[»] scaffold0011 (1 HSPs)
scaffold0011 (72-171)||(127533-127632)
[»] scaffold0118 (1 HSPs)
scaffold0118 (107-180)||(43481-43554)
[»] scaffold2071 (1 HSPs)
scaffold2071 (96-180)||(589-673)
[»] scaffold0013 (1 HSPs)
scaffold0013 (90-155)||(32688-32753)
[»] scaffold0219 (1 HSPs)
scaffold0219 (88-180)||(8099-8190)
[»] scaffold0034 (1 HSPs)
scaffold0034 (119-171)||(108661-108713)
[»] scaffold0019 (1 HSPs)
scaffold0019 (73-145)||(63074-63146)
[»] scaffold0031 (1 HSPs)
scaffold0031 (90-156)||(124086-124152)
[»] scaffold0201 (1 HSPs)
scaffold0201 (73-145)||(21228-21300)


Alignment Details
Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 90 - 180
Target Start/End: Original strand, 48527652 - 48527742
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||||||||| |||||||||||| | ||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||||||||    
T  48527652 gttaactttaactccaaatgtctatggtcgaccaactttaagagtggtccaccatagatcttatcaattattttaatttaaactgtttgat 48527742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 68 - 168
Target Start/End: Complemental strand, 3617517 - 3617417
Alignment:
Q  68 ttattcaaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatt 167  Q
    ||||||||| || || ||||| |||||||||||| ||||||||||||| |  |||||| ||||||||||||||| ||| |||||||||||||||||||||    
T  3617517 ttattcaaaaaagtccttggctgttaactttaacctcaaatgtctatggtgaaccaaccttaagagtggtccactatagatcctattaattattttaatt 3617418  T
Q  168 t 168  Q
    |    
T  3617417 t 3617417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 84 - 180
Target Start/End: Complemental strand, 9226219 - 9226123
Alignment:
Q  84 ttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||| |||||| |||||| ||||||||||||| | || |||| |||| |||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  9226219 ttggacgttaaatttaacctcaaatgtctatggtggatcaaccttaaaagtggtccaccatagatcctattaattattttaatttaaattgtttgat 9226123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 13147400 - 13147325
Alignment:
Q  104 caaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttga 179  Q
    |||||||||||| | ||||||| |||| |||||||||||||| ||||||||||||||||||||||||| |||||||    
T  13147400 caaatgtctatggtggaccaaccttaatagtggtccaccatagatcctattaattattttaatttaaattgtttga 13147325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 119 - 249
Target Start/End: Complemental strand, 16965094 - 16964963
Alignment:
Q  119 gaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttg-atannnnnnnaaaagataatgattgaattacgtaggtct 217  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| ||  |||||  |        |||||| ||  |||| |||||| ||||||    
T  16965094 gaccaactttaagagtggtccaccatagatcctattaattattttaatttcaaccgtttgttttttcttttaaaagagaaccattgtattacgcaggtct 16964995  T
Q  218 attttatcttacgatgtaccacaaacacctaa 249  Q
    ||||||| |||||||||||||| |||||||||    
T  16964994 attttatattacgatgtaccaccaacacctaa 16964963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 72 - 180
Target Start/End: Complemental strand, 46318633 - 46318526
Alignment:
Q  72 tcaaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    ||||||||||| ||||| ||||| ||||||  |||||||||||||| ||  | |||| |||||||||||||||| |||||||||| ||||||||||||||    
T  46318633 tcaaataaatccttggctgttaagtttaaccccaaatgtctatgatggatta-cttttagagtggtccaccatagatcctattaaatattttaatttaaa 46318535  T
Q  172 atgtttgat 180  Q
      |||||||    
T  46318534 tcgtttgat 46318526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 88 - 171
Target Start/End: Original strand, 10711904 - 10711987
Alignment:
Q  88 ccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    |||||||||||||| |||||| |||||||||||||||| | |||||||||||| |||| || ||| ||||| ||||||||||||    
T  10711904 ccgttaactttaacctcaaatatctatgatagaccaacctaaagagtggtccatcataaattctactaatttttttaatttaaa 10711987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 163
Target Start/End: Original strand, 9482537 - 9482646
Alignment:
Q  53 ttatgtttgtccccattattcaaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatccta 152  Q
    ||||||||||| |  |||||||||||||||| |||  ||||||||||||  ||||||||||   | ||||||||||||||||||| ||||||| ||| ||    
T  9482537 ttatgtttgtctctgttattcaaataaatctatggttgttaactttaacc-caaatgtctacagtggaccaactttaagagtggttcaccatagatctta 9482635  T
Q  153 ttaattatttt 163  Q
    |||||||||||    
T  9482636 ttaattatttt 9482646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 85 - 171
Target Start/End: Complemental strand, 10722379 - 10722293
Alignment:
Q  85 tggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    ||||||||||||||||| |||||| |||||||| ||||||| | |||||||||||| |||| || ||| ||||| ||||||||||||    
T  10722379 tggccgttaactttaacctcaaatatctatgatggaccaacctaaagagtggtccatcatagattctactaatttttttaatttaaa 10722293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 73 - 180
Target Start/End: Complemental strand, 15072805 - 15072698
Alignment:
Q  73 caaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaa 172  Q
    ||||||||||  || | |||||||||||| ||||||||||||| | ||||||| | |||||||||||||| || |  ||||||||| | ||||||||||     
T  15072805 caaataaatccatgtctgttaactttaacctcaaatgtctatggtggaccaacctaaagagtggtccaccgtagactctattaattttcttaatttaaat 15072706  T
Q  173 tgtttgat 180  Q
    ||||||||    
T  15072705 tgtttgat 15072698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 90 - 157
Target Start/End: Complemental strand, 15746764 - 15746697
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaat 157  Q
    ||||| |||||||||||||||||||| | ||||||  ||||||||||||||||||| |||||||||||    
T  15746764 gttaagtttaacttcaaatgtctatggtggaccaatcttaagagtggtccaccatagatcctattaat 15746697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 45584988 - 45584915
Alignment:
Q  107 atgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||||| | | ||||||||||||||| ||||||||| |||||||||||||||||||| ||||  |||||||    
T  45584988 atgtctatggtggcccaactttaagagtgctccaccatagatcctattaattattttaatataaatcgtttgat 45584915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 9485285 - 9485221
Alignment:
Q  107 atgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    ||||||||| | || ||||||||||||||||  |||||| |||||||||||||||||||||||||    
T  9485285 atgtctatggtggatcaactttaagagtggttaaccataaatcctattaattattttaatttaaa 9485221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 14478398 - 14478474
Alignment:
Q  104 caaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||||||||||| | |||| ||||||| | |||||||||||| ||||||||||||||| |||||||||  |||||||    
T  14478398 caaatgtctatggtggaccgactttaaaaatggtccaccatagatcctattaattattctaatttaaaccgtttgat 14478474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 48097030 - 48096958
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattt 162  Q
    ||||| |||||| |||||||| |||| | ||||||| |||||||||||| |||||| ||||||||||||||||    
T  48097030 gttaagtttaacctcaaatgtatatggtggaccaaccttaagagtggtctaccatagatcctattaattattt 48096958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 51445722 - 51445798
Alignment:
Q  104 caaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||||||||||| | || ||||||||| | |||||||||||| ||||||||||||||| |||||||||  |||||||    
T  51445722 caaatgtctatggtggatcaactttaaaaatggtccaccatagatcctattaattattctaatttaaaccgtttgat 51445798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 5613082 - 5612993
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||||||||  ||||||| |||| | || || |||||| |||| ||||||||| |||||||||||||||||||||||||  |||||||    
T  5613082 gttaactttaaccccaaatgtttatggtggatcacctttaa-agtgatccaccatagatcctattaattattttaatttaaaccgtttgat 5612993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 88 - 158
Target Start/End: Complemental strand, 18821739 - 18821669
Alignment:
Q  88 ccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaatt 158  Q
    |||||| ||||||||||||||||||||| | ||| ||| |||||||||||| |||| | ||||||||||||    
T  18821739 ccgttatctttaacttcaaatgtctatggtggactaaccttaagagtggtctaccaaagatcctattaatt 18821669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 73 - 171
Target Start/End: Complemental strand, 44999477 - 44999379
Alignment:
Q  73 caaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    ||||||||||  | || |||||||||||| | ||||||||||| | ||||||   |||||||||| ||||||| ||| ||||||||||||||| |||||    
T  44999477 caaataaatccctagctgttaactttaaccttaaatgtctatggtggaccaatcgtaagagtggttcaccatagatcttattaattattttaacttaaa 44999379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 168
Target Start/End: Complemental strand, 52078129 - 52078064
Alignment:
Q  103 tcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaattt 168  Q
    ||||||||||||| |  |||||| ||||||||| | ||||||| ||||||||||||||||||||||    
T  52078129 tcaaatgtctatggtgaaccaaccttaagagtgatacaccatagatcctattaattattttaattt 52078064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 171
Target Start/End: Complemental strand, 6049422 - 6049342
Alignment:
Q  91 ttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    ||||||| |||| |||||||||||| | ||||||  | || ||||||||||| || ||||| |||||||||||||||||||    
T  6049422 ttaacttcaactccaaatgtctatggtggaccaatctaaatagtggtccaccgtagatcctgttaattattttaatttaaa 6049342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 12665907 - 12665998
Alignment:
Q  88 ccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||||||||||||| |||||||| |||| |  |||| ||| ||||||||||||||||| ||| |||||||| | ||||||||||  |||||||    
T  12665907 ccgttaactttaacctcaaatgtttatggtgaaccatctt-aagagtggtccaccatagatcttattaattttgttaatttaaaccgtttgat 12665998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 41873986 - 41873914
Alignment:
Q  73 caaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccata 145  Q
    |||||||||| ||||  ||||| ||||||  |||||||||||| | ||||||| |||||||||||||||||||    
T  41873986 caaataaatccttggttgttaagtttaaccacaaatgtctatggtggaccaaccttaagagtggtccaccata 41873914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 249
Target Start/End: Original strand, 49801766 - 49801895
Alignment:
Q  120 accaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgatannnnnnnaaaagataatgattgaattacgtaggtctat 219  Q
    |||||| |||| |||||||||||||| || ||||||||||||||||||||||  |||||||         ||||  ||  |||| || | | ||||||||    
T  49801766 accaaccttaaaagtggtccaccataaattctattaattattttaatttaaaccgtttgatttttttgttaaagggaaccattggatcatgcaggtctat 49801865  T
Q  220 tttatcttacgatgtaccacaaacacctaa 249  Q
    |||||||||||||||||||| |||| ||||    
T  49801866 tttatcttacgatgtaccaccaacatctaa 49801895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 119 - 166
Target Start/End: Original strand, 15232900 - 15232947
Alignment:
Q  119 gaccaactttaagagtggtccaccatatatcctattaattattttaat 166  Q
    |||||||||||| ||||||||| |||| ||||||||||||||||||||    
T  15232900 gaccaactttaaaagtggtccatcatagatcctattaattattttaat 15232947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 73 - 156
Target Start/End: Original strand, 16123388 - 16123471
Alignment:
Q  73 caaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaa 156  Q
    ||||||||||  |||  ||||| |||||  ||||||||||||| |||||||||||||| |||| ||||||||||| | ||||||    
T  16123388 caaataaatccctggttgttaagtttaatctcaaatgtctatggtagaccaactttaaaagtgatccaccatataccttattaa 16123471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 23091470 - 23091525
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccata 145  Q
    ||||| |||||  ||||||||||||| | |||||||||||| ||||||||||||||    
T  23091470 gttaagtttaatctcaaatgtctatggtggaccaactttaaaagtggtccaccata 23091525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 26286525 - 26286619
Alignment:
Q  85 tggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||| ||||||||||||  ||||||| |||| | || || |||||| |||| ||||||||| |  ||||||||||||||||||||||  |||||||    
T  26286525 tggctgttaactttaaccccaaatgtttatggtggatcacctttaa-agtgatccaccatagactctattaattattttaatttaaaccgtttgat 26286619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 180
Target Start/End: Original strand, 13894732 - 13894821
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||||||||||| ||  || |||||| | ||||||| | |||||| ||| |||||| ||||| |||||||||||||||||||  |||||||    
T  13894732 gttaactttaacctcgcatatctatggt-gaccaacctaaagagttgtctaccatagatcctgttaattattttaatttaaaccgtttgat 13894821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 15234037 - 15233991
Alignment:
Q  94 actttaacttcaaatgtctatgatagaccaactttaagagtggtcca 140  Q
    ||||||||||||||||||||| |||||||||  || |||||||||||    
T  15234037 actttaacttcaaatgtctataatagaccaatcttcagagtggtcca 15233991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 168
Target Start/End: Original strand, 16963951 - 16964029
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaattt 168  Q
    |||||||||||||  |||||| |||||| ||||||| |||| ||||||||| |||| | | |||||||| | |||||||    
T  16963951 gttaactttaactctaaatgtttatgatggaccaaccttaaaagtggtccatcatagaccttattaattttgttaattt 16964029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 35943333 - 35943295
Alignment:
Q  200 attgaattacgtaggtctattttatcttacgatgtacca 238  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  35943333 attgaattacgcaggtctattttatcttacgatgaacca 35943295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 26802088 - 26802148
Alignment:
Q  120 accaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||||| |||||||| |||||| ||| ||| ||||||| |||||||||||||  |||||||    
T  26802088 accaaccttaagagttgtccactatagatcatattaatcattttaatttaaaccgtttgat 26802148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 68 - 171
Target Start/End: Complemental strand, 10669465 - 10669362
Alignment:
Q  68 ttattcaaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatt 167  Q
    ||||||||| || || ||||| |||||||||||| ||||||||||||| |  |||||| ||||||||||||||||||| |||||||||| ||||||||||    
T  10669465 ttattcaaaaaagtccttggctgttaactttaacctcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcctattaaatattttaatt 10669366  T
Q  168 taaa 171  Q
    ||||    
T  10669365 taaa 10669362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 53 - 168
Target Start/End: Original strand, 17455128 - 17455243
Alignment:
Q  53 ttatgtttgtccccattattcaaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatccta 152  Q
    ||||||||||| || | ||||||||||||| ||    ||||||||||||||||||| |||||| ||||||||  |||| |||||||||||||| ||| ||    
T  17455128 ttatgtttgtctccttcattcaaataaatccttttatgttaactttaacttcaaatatctatgctagaccaatcttaaaagtggtccaccatagatctta 17455227  T
Q  153 ttaattattttaattt 168  Q
    ||||||||||||||||    
T  17455228 ttaattattttaattt 17455243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 24192661 - 24192571
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||||||||   ||||||||||| | ||||||| ||||||||||||||||||| ||||||||||||||||||||| |||  |||||||    
T  24192661 gttaactttaaccctaaatgtctatggtggaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgat 24192571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 88 - 171
Target Start/End: Complemental strand, 9854880 - 9854796
Alignment:
Q  88 ccgttaactttaacttc-aaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    ||||||||||||||  | ||||||||||| | ||||||||||||||||||||||||||| |||||||||||| || |||||||||    
T  9854880 ccgttaactttaacccccaaatgtctatggtggaccaactttaagagtggtccaccatagatcctattaattcttctaatttaaa 9854796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 42872188 - 42872120
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaatt 158  Q
    |||||||||||| ||||||||||||| ||||||||| |||||||||||| |||||| ||||||||||||    
T  42872188 gttaactttaacctcaaatgtctatggtagaccaaccttaagagtggtctaccatagatcctattaatt 42872120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 31845792 - 31845703
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||||||||  |||||||||||| |  |||||||| |||||||||||||||||  ||||||||||||||||||| |||| ||||||||    
T  31845792 gttaactttaaccccaaatgtctatggtgaaccaactt-aagagtggtccaccataggtcctattaattattttaatgtaaactgtttgat 31845703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 32798512 - 32798439
Alignment:
Q  107 atgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||||| | || |||| ||||||||||||||||||| |||||||||||||||||||||||||  |||||||    
T  32798512 atgtctatggtggatcaaccttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgat 32798439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 40437567 - 40437503
Alignment:
Q  117 tagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgata 181  Q
    ||||||||| |||| ||||||||||| || ||||||||||||||||||||||||| |||||||||    
T  40437567 tagaccaaccttaaaagtggtccaccgtagatcctattaattattttaatttaaactgtttgata 40437503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 20180671 - 20180582
Alignment:
Q  91 ttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||||||||||   ||||||||||  | ||| ||| ||||||||||||||||||| ||||||||||||||||||||| |||  |||||||    
T  20180671 ttaactttaaccctaaatgtctatagtggactaacattaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgat 20180582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 249
Target Start/End: Complemental strand, 32695234 - 32695112
Alignment:
Q  127 ttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgatannnnnnnaaaagataatgattgaattacgtaggtctattttatct 226  Q
    |||||| |||||||||||| |||||||||||||||||||||||||  |||||||        |||||| ||  |||| ||||   | |||||||||||||    
T  32695234 ttaagattggtccaccatagatcctattaattattttaatttaaaccgtttgatttttttttaaaagagaaccattggattagacaagtctattttatct 32695135  T
Q  227 tacgatgtaccacaaacacctaa 249  Q
    |||||| |||||| |||||||||    
T  32695134 tacgatataccaccaacacctaa 32695112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 42877736 - 42877808
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattt 162  Q
    ||||||||||||  ||||||| |||| | ||||||| |||||| |||||||||||| ||||||||||||||||    
T  42877736 gttaactttaaccccaaatgtgtatggtggaccaaccttaagaatggtccaccatagatcctattaattattt 42877808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 43202212 - 43202304
Alignment:
Q  88 ccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||| ||||||  ||||| |||||  | || |||| ||||||||||||||||||| ||||||||| |||||| |||||||| ||||||||    
T  43202212 ccgttaattttaaccccaaatatctatagtggatcaaccttaagagtggtccaccatagatcctattagttatttaaatttaaactgtttgat 43202304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 8571614 - 8571524
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||| ||||||  |||||||||||| | |||||||||||| | |||||||||||||| | ||||||   |||||||||||| ||||||||    
T  8571614 gttaagtttaaccccaaatgtctatggtggaccaactttaaaaatggtccaccatataccttattaaactttttaatttaaactgtttgat 8571524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 4810621 - 4810674
Alignment:
Q  127 ttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||||||||||||||| |||||||||||  |||||||||||| ||||||||    
T  4810621 ttaagagtggtccaccatagatcctattaatatttttaatttaaactgtttgat 4810674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 119 - 166
Target Start/End: Complemental strand, 13117601 - 13117554
Alignment:
Q  119 gaccaactttaagagtggtccaccatatatcctattaattattttaat 166  Q
    |||||||||||| ||||||||| |||| ||||||||||||||||||||    
T  13117601 gaccaactttaaaagtggtccatcatagatcctattaattattttaat 13117554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 168
Target Start/End: Complemental strand, 42362748 - 42362671
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaattt 168  Q
    ||||||||||| | || ||||||||| | ||||||| ||||||||||| || |||| |||||||||||| |||||||||    
T  42362748 gttaactttaattccagatgtctatggtggaccaacattaagagtggttcatcatagatcctattaatt-ttttaattt 42362671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 17455281 - 17455322
Alignment:
Q  205 attacgtaggtctattttatcttacgatgtaccacaaacacc 246  Q
    |||||| |||||||||||||||||||||||||||| ||||||    
T  17455281 attacgcaggtctattttatcttacgatgtaccactaacacc 17455322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 42098711 - 42098760
Alignment:
Q  119 gaccaactttaagagtggtccaccatatatcctattaattattttaattt 168  Q
    ||||||| |||| |||||||||||||| ||||||||||||| ||||||||    
T  42098711 gaccaaccttaaaagtggtccaccatagatcctattaattactttaattt 42098760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 45281157 - 45281096
Alignment:
Q  119 gaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||| |||||||||||| |||||| |||||||||||  ||||||||||||  |||||||    
T  45281157 gaccaaccttaagagtggtctaccataaatcctattaatatttttaatttaaaccgtttgat 45281096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 38696441 - 38696504
Alignment:
Q  105 aaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaattt 168  Q
    ||||||||||| ||||||||| |||| |||||||||||||| |||  ||||||| || ||||||    
T  38696441 aaatgtctatggtagaccaaccttaaaagtggtccaccatagatctaattaatttttataattt 38696504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 42878799 - 42878756
Alignment:
Q  119 gaccaactttaagagtggtccaccatatatcctattaattattt 162  Q
    ||||||| ||||| ||||||||||||| ||||||||||||||||    
T  42878799 gaccaaccttaagtgtggtccaccatagatcctattaattattt 42878756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 13116447 - 13116497
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtcca 140  Q
    ||||||||||||| ||||||||||| |||||||||  || |||||||||||    
T  13116447 gttaactttaactccaaatgtctataatagaccaatcttcagagtggtcca 13116497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 181
Target Start/End: Complemental strand, 14840896 - 14840806
Alignment:
Q  91 ttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgata 181  Q
    |||| ||||||  |||||||||||| | ||||||| |||| |||| |||||||||  || |||||| | ||||||||||||  ||||||||    
T  14840896 ttaagtttaaccacaaatgtctatggtggaccaacattaaaagtgatccaccatagttcttattaaattttttaatttaaaccgtttgata 14840806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 42100105 - 42100055
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtcca 140  Q
    ||||||||||||||||||||||| || | ||||||| |||| |||||||||    
T  42100105 gttaactttaacttcaaatgtctttggtggaccaaccttaaaagtggtcca 42100055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 6397900 - 6397981
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    ||||| ||||||| |||||  ||||| || |||||| || | |||||||||||||| | | |||||||| ||||||||||||    
T  6397900 gttaaatttaactccaaataactatggtaaaccaacctttacagtggtccaccatagaccttattaatttttttaatttaaa 6397981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 13513541 - 13513613
Alignment:
Q  96 tttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaattt 168  Q
    |||||| |||||||| || |||  ||||  ||||| |||||||||||||||| | |||||||| |||||||||    
T  13513541 tttaacatcaaatgtataagatgaaccatatttaaaagtggtccaccatataccttattaatttttttaattt 13513613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 13603074 - 13603146
Alignment:
Q  96 tttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaattt 168  Q
    |||||| |||||||| || |||  ||||  ||||| |||||||||||||||| | |||||||| |||||||||    
T  13603074 tttaacatcaaatgtataagatgaaccatatttaaaagtggtccaccatataccttattaatttttttaattt 13603146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 9e-25; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 90 - 180
Target Start/End: Original strand, 1102736 - 1102826
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||||||||  |||||||||||| ||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||  |||||||    
T  1102736 gttaactttaaccccaaatgtctatggtagaccaaccttaagagtggtccaccatagatcttattaattattttaatttaaaccgtttgat 1102826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 39603990 - 39604063
Alignment:
Q  107 atgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||||| ||||||||| |||| |||| ||||||||| ||||||||||||||||||||||||| ||||||||    
T  39603990 atgtctatggtagaccaaccttaaaagtgatccaccatagatcctattaattattttaatttaaactgtttgat 39604063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 87 - 171
Target Start/End: Complemental strand, 4127254 - 4127170
Alignment:
Q  87 gccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    |||||||||||||||  ||||||||||||||||| |||  |||| |||||||||||||| ||||| ||||||| |||||||||||    
T  4127254 gccgttaactttaaccccaaatgtctatgatagatcaatcttaaaagtggtccaccatagatcctgttaattaatttaatttaaa 4127170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 245
Target Start/End: Original strand, 30910890 - 30911017
Alignment:
Q  119 gaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttga-tannnnnnnaaaagataatgattgaattacgtaggtct 217  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||| ||  |||||| |        |||||| ||  ||||||||| | | ||||    
T  30910890 gaccaaccttaagagtggtccaccatagatcctattaattattttaatttcaaccgtttgagtttttctttaaaagagaaccattgaattaggcatgtct 30910989  T
Q  218 attttatcttacgatgtaccacaaacac 245  Q
    |||||||||||||||||||||| |||||    
T  30910990 attttatcttacgatgtaccaccaacac 30911017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 30859151 - 30859078
Alignment:
Q  107 atgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||||| | ||||||  ||||||||||||||||||| |||||||||||||||||||||||||  |||||||    
T  30859151 atgtctatggtggaccaatcttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgat 30859078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 9220458 - 9220365
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaaga---gtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||||||||||| ||||||||||||| | ||||||| ||||||   ||||||| ||||| ||| |||||||||||||||||||||  |||||||    
T  9220458 gttaactttaacctcaaatgtctatggtggaccaacattaagaagagtggtcccccataaatcttattaattattttaatttaaaccgtttgat 9220365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 88 - 171
Target Start/End: Original strand, 10735879 - 10735962
Alignment:
Q  88 ccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    ||||||||||||||| ||||| |||||| | ||||||| |||| ||  |||||||||| ||| |||||||||||||||||||||    
T  10735879 ccgttaactttaactccaaatatctatggtggaccaacgttaacagcagtccaccatagatcatattaattattttaatttaaa 10735962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 22047869 - 22047942
Alignment:
Q  107 atgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||||| | || |||| ||||||||||||||||||| ||||||| |||||||||||||||||  |||||||    
T  22047869 atgtctatggtggatcaaccttaagagtggtccaccataaatcctatgaattattttaatttaaaccgtttgat 22047942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 1010363 - 1010291
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattt 162  Q
    ||||||||||||  ||||||| |||| | ||||||| ||||||||||||| ||||| ||||||||||||||||    
T  1010363 gttaactttaaccccaaatgtgtatggtggaccaaccttaagagtggtccgccatagatcctattaattattt 1010291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 8521372 - 8521444
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattt 162  Q
    ||||||||||||  ||||||| |||| | ||||||| |||||| |||||||||||| ||||||||||||||||    
T  8521372 gttaactttaaccccaaatgtgtatggtggaccaaccttaagaatggtccaccatagatcctattaattattt 8521444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 11262540 - 11262592
Alignment:
Q  119 gaccaactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    ||||||| ||||||||||||||||||| ||||||||||||||| |||||||||    
T  11262540 gaccaaccttaagagtggtccaccatagatcctattaattattataatttaaa 11262592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 27705296 - 27705222
Alignment:
Q  107 atgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgata 181  Q
    ||||||||| | ||||||| |||| |||||||||||||| |||||||||||  ||||||||||||  ||||||||    
T  27705296 atgtctatggtggaccaaccttaaaagtggtccaccatagatcctattaatatttttaatttaaaccgtttgata 27705222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 33173975 - 33173903
Alignment:
Q  73 caaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccata 145  Q
    |||||||||| ||||| ||||| ||||||  |||||||||||| | ||||||| |||||||||||| ||||||    
T  33173975 caaataaatccttggctgttaagtttaaccccaaatgtctatggtggaccaaccttaagagtggtctaccata 33173903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 1009332 - 1009375
Alignment:
Q  119 gaccaactttaagagtggtccaccatatatcctattaattattt 162  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||    
T  1009332 gaccaaccttaagagtggtccaccatagatcctattaattattt 1009375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 13520764 - 13520711
Alignment:
Q  123 aactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtt 176  Q
    ||||||||||||||| ||||||| ||||||||||||| ||| ||||||| ||||    
T  13520764 aactttaagagtggttcaccatagatcctattaattaatttgatttaaactgtt 13520711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 36898864 - 36898815
Alignment:
Q  200 attgaattacgtaggtctattttatcttacgatgtaccacaaacacctaa 249  Q
    |||| |||||| | |||||||||||||||||||||||||| |||||||||    
T  36898864 attggattacgcatgtctattttatcttacgatgtaccaccaacacctaa 36898815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 30857917 - 30857965
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtc 138  Q
    |||||||||||||| ||||||||||||| ||||||| |||| |||||||    
T  30857917 gttaactttaactttaaatgtctatgatggaccaaccttaaaagtggtc 30857965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 35081437 - 35081357
Alignment:
Q  88 ccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaattt 168  Q
    |||||||||||||| ||||||||||||  | || |||| |||||||| |||||||||| | | || ||||| |||||||||    
T  35081437 ccgttaactttaacctcaaatgtctatagtggatcaaccttaagagttgtccaccataaaccttaataatttttttaattt 35081357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 36898979 - 36898898
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    |||||||||||| |||||| | |||| | | ||||| |||| ||| |||||||||| || || |||||||||||| ||||||    
T  36898979 gttaactttaacctcaaatatttatggtggcccaaccttaaaagtagtccaccatagattctgttaattattttagtttaaa 36898898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 17420526 - 17420494
Alignment:
Q  148 tcctattaattattttaatttaaaatgtttgat 180  Q
    |||||||||||||||||||||||| ||||||||    
T  17420526 tcctattaattattttaatttaaattgtttgat 17420494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 22308814 - 22308742
Alignment:
Q  73 caaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccata 145  Q
    ||||||||||  |||  ||||| ||||||  |||||||||||| | |||| || |||||||||||||||||||    
T  22308814 caaataaatccatggttgttaagtttaaccccaaatgtctatggtggacctaccttaagagtggtccaccata 22308742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 43033199 - 43033280
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    ||||| |||||| ||||||||||||| ||||||||| ||||||||||||||||||| | |||||||||||||||||||||||    
T  43033199 gttaagtttaacctcaaatgtctatggtagaccaaccttaagagtggtccaccataaaccctattaattattttaatttaaa 43033280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 107 - 249
Target Start/End: Original strand, 29219522 - 29219664
Alignment:
Q  107 atgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgatannnnnnnaaaagataatgattgaat 206  Q
    ||||||||| | ||||||  |||| |||||||||||||| |||||||||||||||||||||| ||  |||||||        |||||| ||  |||| ||    
T  29219522 atgtctatggtggaccaatcttaaaagtggtccaccatagatcctattaattattttaatttcaaccgtttgattttaaaaaaaaagagaaccattggat 29219621  T
Q  207 tacgtaggtctattttatcttacgatgtaccacaaacacctaa 249  Q
    ||  ||||||||||||||||||||||||||||| |||||||||    
T  29219622 tagataggtctattttatcttacgatgtaccaccaacacctaa 29219664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 107 - 249
Target Start/End: Original strand, 29332821 - 29332963
Alignment:
Q  107 atgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgatannnnnnnaaaagataatgattgaat 206  Q
    ||||||||| | ||||||  |||| |||||||||||||| |||||||||||||||||||||| ||  |||||||        |||||| ||  |||| ||    
T  29332821 atgtctatggtggaccaatcttaaaagtggtccaccatagatcctattaattattttaatttcaaccgtttgattttaaaaaaaaagagaaccattggat 29332920  T
Q  207 tacgtaggtctattttatcttacgatgtaccacaaacacctaa 249  Q
    ||  ||||||||||||||||||||||||||||| |||||||||    
T  29332921 tagataggtctattttatcttacgatgtaccaccaacacctaa 29332963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 34467607 - 34467715
Alignment:
Q  73 caaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaa 172  Q
    ||||||||||  |||| ||| | |||||||||||||||||||||| ||| ||| ||||||||||||||||||| | | |||||| | ||||||||||||     
T  34467607 caaataaatccctggctgttgagtttaacttcaaatgtctatgatggacaaaccttaagagtggtccaccataaaccttattaagttttttaatttaaac 34467706  T
Q  173 tgtttgata 181  Q
    |||||||||    
T  34467707 tgtttgata 34467715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 72 - 180
Target Start/End: Original strand, 35903608 - 35903715
Alignment:
Q  72 tcaaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    ||||||||||| ||||| ||||| ||||||  |||||||||||||||||  | |||| |||||||||||||||| |||||||||| ||||||||||||||    
T  35903608 tcaaataaatccttggctgttaagtttaaccccaaatgtctatgatagatta-cttttagagtggtccaccatagatcctattaaatattttaatttaaa 35903706  T
Q  172 atgtttgat 180  Q
      |||||||    
T  35903707 ccgtttgat 35903715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 4921042 - 4920966
Alignment:
Q  104 caaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||||||||||| |||||||||||||| | |||||||||||| ||||||||||||||| |||||||||  |||||||    
T  4921042 caaatgtctatggtagaccaactttaaaaatggtccaccataaatcctattaattattctaatttaaaccgtttgat 4920966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 11317348 - 11317284
Alignment:
Q  107 atgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    ||||||||| ||||||||| |||||||||||| |||||| |||||||||||||||||||||||||    
T  11317348 atgtctatggtagaccaaccttaagagtggtctaccatagatcctattaattattttaatttaaa 11317284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 42641841 - 42641768
Alignment:
Q  107 atgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||||| | | ||||| |||||||||||| |||||| ||||||||||||||||||||||||| ||||||||    
T  42641841 atgtctatggtgggccaaccttaagagtggtctaccatagatcctattaattattttaatttaaactgtttgat 42641768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 32469297 - 32469349
Alignment:
Q  119 gaccaactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  32469297 gaccaactttaagagtggtccactatagatcctattaattattttaatttaaa 32469349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 127 - 249
Target Start/End: Complemental strand, 18616965 - 18616842
Alignment:
Q  127 ttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgatannnnnnnaaaa-gataatgattgaattacgtaggtctattttatc 225  Q
    |||| |||||||||||||| |||||||||||||||||||||| ||  |||||||        |||| || ||  |||| ||||  |||||||||||||||    
T  18616965 ttaaaagtggtccaccatagatcctattaattattttaatttcaaccgtttgattttttttaaaaaagagaaccattggattagataggtctattttatc 18616866  T
Q  226 ttacgatgtaccacaaacacctaa 249  Q
    |||||||||||||| |||||||||    
T  18616865 ttacgatgtaccaccaacacctaa 18616842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 72 - 180
Target Start/End: Original strand, 34464068 - 34464176
Alignment:
Q  72 tcaaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    |||||||||||| || | ||||| ||||||  |||||||||||  | ||||||| ||||||||||||||||||| | | |||||  | ||||||||||||    
T  34464068 tcaaataaatctctgactgttaagtttaaccccaaatgtctatcgttgaccaaccttaagagtggtccaccatagaccttattagattttttaatttaaa 34464167  T
Q  172 atgtttgat 180  Q
     ||||||||    
T  34464168 ctgtttgat 34464176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 158
Target Start/End: Complemental strand, 43034455 - 43034400
Alignment:
Q  103 tcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaatt 158  Q
    ||||||||||||| | || |||||||||||||||||||||||| ||||||||||||    
T  43034455 tcaaatgtctatggtggatcaactttaagagtggtccaccatagatcctattaatt 43034400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 125 - 168
Target Start/End: Complemental strand, 1085350 - 1085307
Alignment:
Q  125 ctttaagagtggtccaccatatatcctattaattattttaattt 168  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||    
T  1085350 ctttaagagtggtacaccatagatcctattaattattttaattt 1085307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 90 - 155
Target Start/End: Complemental strand, 16295215 - 16295150
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctatta 155  Q
    |||||||||||||| |||||| | || | ||||||| |||| |||||||||||||| |||||||||    
T  16295215 gttaactttaactttaaatgtttttggtggaccaaccttaacagtggtccaccatagatcctatta 16295150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 30748634 - 30748687
Alignment:
Q  127 ttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||||||  ||||||| ||| ||||||||||||||||||||| ||||||||    
T  30748634 ttaagagtggcacaccatagatcatattaattattttaatttaaattgtttgat 30748687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 30749322 - 30749242
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    ||||| |||||| ||||||||||||| || |||||| ||||||||||| ||| | |   |||||||||||||||||||||||    
T  30749322 gttaagtttaacctcaaatgtctatggta-accaaccttaagagtggttcactacagggcctattaattattttaatttaaa 30749242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 6032329 - 6032277
Alignment:
Q  73 caaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaac 125  Q
    ||||||||||  || |||||||||||||||||||||||||||| | |||||||    
T  6032329 caaataaatccatgaccgttaactttaacttcaaatgtctatggttgaccaac 6032277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 28611236 - 28611161
Alignment:
Q  104 caaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||||||||||| | |||| ||||||| | |||||||| ||| ||||||||||||| |||||||||||  |||||||    
T  28611236 caaatgtctatggtggaccgactttaaaaatggtccactatagatcctattaatta-tttaatttaaaccgtttgat 28611161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 34513537 - 34513461
Alignment:
Q  104 caaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||| |||| | ||||||| ||||||||| ||||||||| | | |||||||| ||||||||||||  |||||||    
T  34513537 caaatgtatatggttgaccaaccttaagagtgatccaccatagaccttattaatttttttaatttaaaccgtttgat 34513461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 8320895 - 8320965
Alignment:
Q  110 tctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||||| | ||||| | ||||||| ||||||||||| ||  |||||||||||||||||||||  |||||||    
T  8320895 tctatggtggaccatccttaagagcggtccaccatagattatattaattattttaatttaaaccgtttgat 8320965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 249
Target Start/End: Complemental strand, 1085260 - 1085223
Alignment:
Q  212 aggtctattttatcttacgatgtaccacaaacacctaa 249  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  1085260 aggtttattttatcttacgatgtaccaccaacacctaa 1085223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 6030438 - 6030377
Alignment:
Q  119 gaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||| ||||||||| || |||||| |||||||||||  ||||||||||||  |||||||    
T  6030438 gaccaaccttaagagtgatctaccatagatcctattaatatttttaatttaaaccgtttgat 6030377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 34512968 - 34513020
Alignment:
Q  128 taagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||||||||||||||||||| | |||||| | |||||||||||| | ||||||    
T  34512968 taagagtggtccaccatataccttattaaattttttaatttaaactatttgat 34513020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 84 - 180
Target Start/End: Original strand, 56085459 - 56085555
Alignment:
Q  84 ttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||| ||||||||||||  |||||||||||| | ||| ||| ||||||||||||||||||| |||||||||||||||||||||||||  |||||||    
T  56085459 ttggctgttaactttaaccccaaatgtctatggtggactaaccttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgat 56085555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 90 - 180
Target Start/End: Original strand, 44498579 - 44498669
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||||||||||||| ||||||||||| | || |||| ||||||||||||||||||| ||||||||||||||||||||| |||  |||||||    
T  44498579 gttaactttaactttaaatgtctatggtggatcaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgat 44498669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 36845543 - 36845619
Alignment:
Q  105 aaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgata 181  Q
    |||||| |||||||||||||| |||||||||||||||||||  ||||||||||||||||||| |||| |||||||||    
T  36845543 aaatgtttatgatagaccaacattaagagtggtccaccataggtcctattaattattttaatgtaaactgtttgata 36845619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 107 - 249
Target Start/End: Complemental strand, 2312461 - 2312319
Alignment:
Q  107 atgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgatannnnnnnaaaagataatgattgaat 206  Q
    ||||||||| | ||||||  |||| |||||||||||||| ||||||||||||||||||||||||| ||||||||        |||||| ||  |||| ||    
T  2312461 atgtctatggtggaccaatcttaaaagtggtccaccatagatcctattaattattttaatttaaactgtttgattttttttaaaaagagaaccattggat 2312362  T
Q  207 tacgtaggtctattttatcttacgatgtaccacaaacacctaa 249  Q
    ||   ||| ||||||||||||| |||||||||| |||||||||    
T  2312361 tagacaggcctattttatcttatgatgtaccaccaacacctaa 2312319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 88 - 171
Target Start/End: Original strand, 4871609 - 4871693
Alignment:
Q  88 ccgttaactttaact-tcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    ||||||||||||||  ||||||||||||| | ||||||| | |||||||||||||| || |||||||||||||||||||||||||    
T  4871609 ccgttaactttaaccctcaaatgtctatggtggaccaacctaaagagtggtccaccgtagatcctattaattattttaatttaaa 4871693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 11968647 - 11968711
Alignment:
Q  107 atgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    ||||||||||| ||||||| |||||||||||||| |||| |||||||||||||||||||||||||    
T  11968647 atgtctatgatggaccaaccttaagagtggtccatcatagatcctattaattattttaatttaaa 11968711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 72 - 180
Target Start/End: Original strand, 13165595 - 13165703
Alignment:
Q  72 tcaaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    ||||||||||| ||| | ||||| ||||||||||||| |||||| | ||||||| ||||||||||||||||||| |    ||||||||||||||||||||    
T  13165595 tcaaataaatccttgactgttaagtttaacttcaaatttctatggtggaccaaccttaagagtggtccaccatagacttcattaattattttaatttaaa 13165694  T
Q  172 atgtttgat 180  Q
      |||||||    
T  13165695 ccgtttgat 13165703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 107 - 238
Target Start/End: Original strand, 7707725 - 7707857
Alignment:
Q  107 atgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttga-tannnnnnnaaaagataatgattgaa 205  Q
    |||||| || ||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||  |||||| |        |||||| ||  |||| |    
T  7707725 atgtctttggtagaccaaccttaagagtggtccaccatagatcctattaattattttaatttcaaccgtttgattttttctttaaaagagaaccattgga 7707824  T
Q  206 ttacgtaggtctattttatcttacgatgtacca 238  Q
    ||| | |||||||||||||||||||||||||||    
T  7707825 ttaggcaggtctattttatcttacgatgtacca 7707857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 110 - 180
Target Start/End: Complemental strand, 52138771 - 52138701
Alignment:
Q  110 tctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||||| |||||||||||||||| |||||||||||| ||||||||||||||| |||||||||  |||||||    
T  52138771 tctatggtagaccaactttaagaatggtccaccatagatcctattaattattctaatttaaaccgtttgat 52138701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 27850918 - 27850845
Alignment:
Q  107 atgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||||| | ||||||| |||| |||||||||||||| |||||||||||||||||||||||||  |||||||    
T  27850918 atgtctatggtggaccaaccttaaaagtggtccaccatagatcctattaattattttaatttaaaccgtttgat 27850845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 19750294 - 19750202
Alignment:
Q  88 ccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||||||||||||| | ||||||||||| | ||| ||  |||| ||| |||||||||| |||||||||||||||||||||||||  |||||||    
T  19750294 ccgttaactttaaccttaaatgtctatggtggacaaatcttaaaagttgtccaccatagatcctattaattattttaatttaaatcgtttgat 19750202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 19789512 - 19789604
Alignment:
Q  88 ccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||||||||||||| | ||||||||||| | ||| ||  |||| ||| |||||||||| |||||||||||||||||||||||||  |||||||    
T  19789512 ccgttaactttaaccttaaatgtctatggtggacaaatcttaaaagttgtccaccatagatcctattaattattttaatttaaatcgtttgat 19789604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 169
Target Start/End: Original strand, 22069316 - 22069432
Alignment:
Q  53 ttatgtttgtccccattattcaaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatccta 152  Q
    ||||||||||  || |||||||||||||||  |||  |||||||||||||||||||||||||| | ||| ||| |||| |||||| ||||||| |  |||    
T  22069316 ttatgtttgtttccgttattcaaataaatcaatggttgttaactttaacttcaaatgtctatggtggacgaaccttaaaagtggttcaccatagactcta 22069415  T
Q  153 ttaattattttaattta 169  Q
    |||||  ||||||||||    
T  22069416 ttaatatttttaattta 22069432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 90 - 180
Target Start/End: Original strand, 1519929 - 1520018
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||||||||  ||||||| |||| |||| || |||||| |||| ||||||||| |||||||||||||||||||||||||  |||||||    
T  1519929 gttaactttaaccccaaatgtttatggtagatcacctttaa-agtgatccaccatagatcctattaattattttaatttaaaccgtttgat 1520018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 90 - 180
Target Start/End: Original strand, 26629909 - 26629998
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||||||||  ||||||| |||| |  |||||||| |||||||||||||||||  ||||||||||||||||||| |||| ||||||||    
T  26629909 gttaactttaaccccaaatgtttatggtgaaccaactt-aagagtggtccaccataggtcctattaattattttaatgtaaactgtttgat 26629998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 53435769 - 53435699
Alignment:
Q  72 tcaaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccacc 142  Q
    ||||||||||| ||| | ||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||    
T  53435769 tcaaataaatccttgacggttaagtttaactttaaatgtctatggtagaccaaccttaagagtggtccacc 53435699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 26496293 - 26496216
Alignment:
Q  104 caaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgata 181  Q
    |||||||||||| | |||| ||||||| | |||||||||||| ||||||||||||||| |||||||||  ||||||||    
T  26496293 caaatgtctatggtggaccgactttaaaaatggtccaccatagatcctattaattattctaatttaaaccgtttgata 26496216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 52240013 - 52240086
Alignment:
Q  107 atgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||||| | ||||||| ||||||||||||||||||| |||||||||||  ||||||||||||  |||||||    
T  52240013 atgtctatggtggaccaaccttaagagtggtccaccatagatcctattaatatttttaatttaaaccgtttgat 52240086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 13166784 - 13166712
Alignment:
Q  73 caaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccata 145  Q
    |||||||||| ||| | ||||| |||||||||||||||||||||| |||||||  |||||||| |||||||||    
T  13166784 caaataaatccttgactgttaagtttaacttcaaatgtctatgatggaccaaccgtaagagtgatccaccata 13166712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 125 - 249
Target Start/End: Original strand, 23202000 - 23202127
Alignment:
Q  125 ctttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat---annnnnnnaaaagataatgattgaattacgtaggtctattt 221  Q
    ||||||||||||| |||||||  |||||||||||||||||||||  |  |||||||   |       |||||| ||  ||||||||| | ||||||||||    
T  23202000 ctttaagagtggtacaccataggtcctattaattattttaatttcgaccgtttgatttaaaaaaaaaaaaagagaaccattgaattaagcaggtctattt 23202099  T
Q  222 tatcttacgatgtaccacaaacacctaa 249  Q
    |||||||||||||||||| |||||||||    
T  23202100 tatcttacgatgtaccaccaacacctaa 23202127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 40723345 - 40723417
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattt 162  Q
    ||||| |||||| |||||||| |||| | ||||||| |||||||||||| |||||| ||||||||||||||||    
T  40723345 gttaagtttaacctcaaatgtatatggtggaccaaccttaagagtggtctaccatagatcctattaattattt 40723417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 15450043 - 15449984
Alignment:
Q  119 gaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttg 178  Q
    ||||||| ||||||||||||||||||| |||||||||||  |||||||||||| ||||||    
T  15450043 gaccaaccttaagagtggtccaccatagatcctattaatatttttaatttaaactgtttg 15449984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 28590872 - 28590812
Alignment:
Q  120 accaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||||||||||||||| | || |||| |||||||||||||||||||| |||| ||||||||    
T  28590872 accaactttaagagtgattcatcatagatcctattaattattttaatataaactgtttgat 28590812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 5591465 - 5591418
Alignment:
Q  73 caaataaatctttggccgttaactttaacttcaaatgtctatgataga 120  Q
    |||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  5591465 caaataaatctttggctgttaaatttaacttcaaatgtctatggtaga 5591418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 48126905 - 48126952
Alignment:
Q  73 caaataaatctttggccgttaactttaacttcaaatgtctatgataga 120  Q
    |||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  48126905 caaataaatctttggctgttaaatttaacttcaaatgtctatggtaga 48126952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 49896570 - 49896491
Alignment:
Q  102 ttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgata 181  Q
    |||||||| ||||| | ||||||| | |||||||||||||  || ||||| |||||||||||||||||||  ||||||||    
T  49896570 ttcaaatggctatggtggaccaacctaaagagtggtccactgtagatcctgttaattattttaatttaaaccgtttgata 49896491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 4714139 - 4714193
Alignment:
Q  91 ttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccata 145  Q
    |||| |||||||||||||||||||| | || |||| |||||||||||||||||||    
T  4714139 ttaagtttaacttcaaatgtctatggtggatcaaccttaagagtggtccaccata 4714193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 7053332 - 7053385
Alignment:
Q  127 ttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||||| ||||||||| |||||||||||| ||||||||||||  |||||||    
T  7053332 ttaagagtgatccaccatagatcctattaatttttttaatttaaatcgtttgat 7053385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 34326874 - 34326923
Alignment:
Q  119 gaccaactttaagagtggtccaccatatatcctattaattattttaattt 168  Q
    |||||||||||||||||||| || ||| |||||||||||||||| |||||    
T  34326874 gaccaactttaagagtggtctactatagatcctattaattatttaaattt 34326923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 6348272 - 6348324
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccacc 142  Q
    ||||| |||||| ||||||||||||| | ||||||| ||||||||||||||||    
T  6348272 gttaagtttaacctcaaatgtctatggtggaccaaccttaagagtggtccacc 6348324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 45535207 - 45535252
Alignment:
Q  134 tggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||||||||||| |||||||||||| |||||||||||| ||||||||    
T  45535207 tggtccaccatagatcctattaatt-ttttaatttaaactgtttgat 45535252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 165
Target Start/End: Complemental strand, 56157493 - 56157419
Alignment:
Q  91 ttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaa 165  Q
    ||||||||||| ||||||||||    | ||||||  ||||||||| ||||||||| |||||||||||| ||||||    
T  56157493 ttaactttaacctcaaatgtctcaagtggaccaatcttaagagtgttccaccatagatcctattaatttttttaa 56157419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 1794560 - 1794621
Alignment:
Q  119 gaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||| ||||||||||||||||||| | | |||||| | ||||||||||||  |||||||    
T  1794560 gaccaaccttaagagtggtccaccatagaccttattaaattttttaatttaaaccgtttgat 1794621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 53432162 - 53432258
Alignment:
Q  72 tcaaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaattt 168  Q
    |||||||||||  || | ||||| ||||||  |||||||||||| |  |||||||||||||||||  ||||||| | | |||||||| ||| |||||    
T  53432162 tcaaataaatccctgacggttaagtttaaccccaaatgtctatggtgaaccaactttaagagtggctcaccatacaccttattaattttttcaattt 53432258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 68 - 180
Target Start/End: Original strand, 10338834 - 10338946
Alignment:
Q  68 ttattcaaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatt 167  Q
    ||||||||| || ||| || | |||||||||||| ||| |||||||| ||  |||||| ||||||||||||||||||| |||||||||||||||||||||    
T  10338834 ttattcaaaaaagtctctgcctgttaactttaacctcagatgtctataatgaaccaaccttaagagtggtccaccatagatcctattaattattttaatt 10338933  T
Q  168 taaaatgtttgat 180  Q
    | || ||||||||    
T  10338934 ttaactgtttgat 10338946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 91 - 180
Target Start/End: Original strand, 10301053 - 10301142
Alignment:
Q  91 ttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||||||| |||||| |||||| |  |||||| ||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||    
T  10301053 ttaactttaacctcaaatatctatggtgaaccaaccttaagagtgatccaccatagatcctattaattattttaatttaaactgtttgat 10301142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 14745200 - 14745108
Alignment:
Q  88 ccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||| |||||||||  ||||| ||| || | ||||||| ||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||    
T  14745200 ccgtcaactttaaccccaaatatctgtggtggaccaaccttaagagtggttcaccatagatcctattaattattttaatttaaactgtttgat 14745108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 249
Target Start/End: Complemental strand, 27841678 - 27841545
Alignment:
Q  119 gaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttga---tannnnnnnaaaagataatgattgaattacgtaggt 215  Q
    ||||||| ||||||||||||||||||| |||||| ||||||||||||||| || |||||||   ||       |||||| ||  |||| |||| | | ||    
T  27841678 gaccaaccttaagagtggtccaccatagatcctaataattattttaattttaactgtttgattttaaaaaaaaaaaagagaactattggattaggcaagt 27841579  T
Q  216 ctattttatcttacgatgtaccacaaacacctaa 249  Q
    |||||||||||||||||||||||| |||||||||    
T  27841578 ctattttatcttacgatgtaccaccaacacctaa 27841545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 85 - 171
Target Start/End: Original strand, 48083340 - 48083426
Alignment:
Q  85 tggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    |||| ||||||||||||  |||||||||||| |  || ||| |||||||||||| |||||| |||||||||||||||||||||||||    
T  48083340 tggcggttaactttaaccacaaatgtctatggtgcactaaccttaagagtggtctaccatagatcctattaattattttaatttaaa 48083426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 120 - 249
Target Start/End: Original strand, 26886421 - 26886551
Alignment:
Q  120 accaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttga-tannnnnnnaaaagataatgattgaattacgtaggtcta 218  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||  |||||| |        |||||  ||  |||| |||| | | |||||    
T  26886421 accaaccttaagagtggtccaccataaatcctattaattattttaatttaaaccgtttgattttttttttaaaagggaaccattggattatgcatgtcta 26886520  T
Q  219 ttttatcttacgatgtaccacaaacacctaa 249  Q
    ||||||||||||||||||||| |||||||||    
T  26886521 ttttatcttacgatgtaccaccaacacctaa 26886551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 38242496 - 38242423
Alignment:
Q  107 atgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||||| | ||||||| ||||||||||||||||||| || ||||||||||||||||||||||  |||||||    
T  38242496 atgtctatggtggaccaaccttaagagtggtccaccataaattctattaattattttaatttaaaccgtttgat 38242423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 49379834 - 49379911
Alignment:
Q  104 caaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgata 181  Q
    |||||||||||| | |||| ||||||| | |||||||||||| ||||||||||||||| ||||||||| |||||||||    
T  49379834 caaatgtctatggtggaccgactttaaaaatggtccaccatagatcctattaattattctaatttaaactgtttgata 49379911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 119 - 249
Target Start/End: Original strand, 35371055 - 35371187
Alignment:
Q  119 gaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttga--tannnnnnnaaaagataatgattgaattacgtaggtc 216  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||| || | |||||  |        |||||| ||  |||| |||| | | |||    
T  35371055 gaccaaccttaagagtggtccaccatagatcctattaattattttaattttaactttttgattttttttttaaaaagagaaccattggattaggcaagtc 35371154  T
Q  217 tattttatcttacgatgtaccacaaacacctaa 249  Q
    ||||||||||||||||||||||| |||||||||    
T  35371155 tattttatcttacgatgtaccaccaacacctaa 35371187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 249
Target Start/End: Complemental strand, 41264615 - 41264490
Alignment:
Q  125 ctttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgatannnnnnnaaaa-gataatgattgaattacgtaggtctatttta 223  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||  |  |||||||        |||| || ||  ||||||||| | ||||||||||||    
T  41264615 ctttaagagtggtacaccatagatcctattaattattttaatttcgaccgtttgatttttttttaaaaagagaaccattgaattaagcaggtctatttta 41264516  T
Q  224 tcttacgatgtaccacaaacacctaa 249  Q
    |||||||||||||||| |||||||||    
T  41264515 tcttacgatgtaccaccaacacctaa 41264490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 3208632 - 3208693
Alignment:
Q  119 gaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||| ||||||||||||||||||| ||||||||||||||| |||||||||  |||||||    
T  3208632 gaccaaccttaagagtggtccaccataaatcctattaattattataatttaaaccgtttgat 3208693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 34819250 - 34819194
Alignment:
Q  122 caactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttg 178  Q
    |||| ||||||||||||||||||| ||||||||| ||||||||||||||| ||||||    
T  34819250 caaccttaagagtggtccaccatagatcctattacttattttaatttaaactgtttg 34819194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 53194612 - 53194520
Alignment:
Q  88 ccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||||||||||||||| |||| |||||| ||||| ||  |||| |||| ||||||||| || ||||||||||||||| ||||||  |||||||    
T  53194612 ccgttaactttaactttaaatatctatggtagacaaatcttaaaagtgatccaccatagattctattaattattttattttaaaccgtttgat 53194520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 13621037 - 13621119
Alignment:
Q  90 gttaactttaacttc-aaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    |||||||||||| || ||||||||||| | |||| |||| || | |||||||||||| ||||||||||||||| |||||||||    
T  13621037 gttaactttaacctccaaatgtctatggtggaccgacttaaaaaatggtccaccatagatcctattaattattctaatttaaa 13621119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 10732109 - 10732048
Alignment:
Q  107 atgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaattt 168  Q
    ||||||||| | ||||||| || |||| ||||||||||| ||||||||||||||||||||||    
T  10732109 atgtctatggtggaccaacctttagagcggtccaccatagatcctattaattattttaattt 10732048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 46368958 - 46369007
Alignment:
Q  122 caactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    |||||| ||||||| ||||||||||||| |||||||||||||||||||||    
T  46368958 caacttaaagagtgttccaccatatatcatattaattattttaatttaaa 46369007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 53612986 - 53613035
Alignment:
Q  88 ccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggt 137  Q
    ||||||||||||||||||||||||||||||  ||||||||||| ||||||    
T  53612986 ccgttaactttaacttcaaatgtctatgatgaaccaactttaaaagtggt 53613035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 73 - 180
Target Start/End: Original strand, 42684977 - 42685084
Alignment:
Q  73 caaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaa 172  Q
    |||||||||| ||| | ||||| ||||||  |||||||||||| |  |||||  ||||||||||||||||||| | | |||||| | ||||||||||||     
T  42684977 caaataaatccttgactgttaagtttaaccccaaatgtctatggtgaaccaagcttaagagtggtccaccataaaccttattaaattttttaatttaaac 42685076  T
Q  173 tgtttgat 180  Q
     |||||||    
T  42685077 cgtttgat 42685084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 168
Target Start/End: Original strand, 10731002 - 10731080
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaattt 168  Q
    |||||||||||||||||||||||||| |  |||||| |||| ||||||| | |||||| | |||||||| | |||||||    
T  10731002 gttaactttaacttcaaatgtctatggtgaaccaaccttaaaagtggtctatcatataccttattaattttgttaattt 10731080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 53614254 - 53614192
Alignment:
Q  106 aatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaattt 168  Q
    |||||||||| | || || | ||||||||||||||||||| |||||| |||||||||||||||    
T  53614254 aatgtctatggtggatcatccttaagagtggtccaccatagatcctagtaattattttaattt 53614192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 91 - 180
Target Start/End: Original strand, 53420436 - 53420525
Alignment:
Q  91 ttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||| ||||||  |||||||||||| | |||||||||||| |||| ||||||||| | | ||||||   |||||||||||| ||||||||    
T  53420436 ttaagtttaaccacaaatgtctatggtggaccaactttaaaagtgatccaccatagaccttattaaactttttaatttaaactgtttgat 53420525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 7270439 - 7270507
Alignment:
Q  88 ccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaa 156  Q
    |||||||||||||| |||||||||| |  | ||||||| |||||||||||| |||||| ||| ||||||    
T  7270439 ccgttaactttaacctcaaatgtctgtagtggaccaaccttaagagtggtctaccatagatcttattaa 7270507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 3455593 - 3455550
Alignment:
Q  119 gaccaactttaagagtggtccaccatatatcctattaattattt 162  Q
    ||||||| ||||||||||||||||||| ||| ||||||||||||    
T  3455593 gaccaaccttaagagtggtccaccatagatcatattaattattt 3455550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 140
Target Start/End: Original strand, 27838043 - 27838086
Alignment:
Q  97 ttaacttcaaatgtctatgatagaccaactttaagagtggtcca 140  Q
    ||||||||||||||||||| |||||||| ||||| |||||||||    
T  27838043 ttaacttcaaatgtctatggtagaccaattttaaaagtggtcca 27838086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 28909561 - 28909515
Alignment:
Q  134 tggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||||||||||| |||||||||||| |||||||||||| || |||||    
T  28909561 tggtccaccatagatcctattaatttttttaatttaaactggttgat 28909515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 36175380 - 36175461
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    ||||| ||||||  |||||||||||||| || |||| |||    | |||||||||||||||||||||||  |||||||||||    
T  36175380 gttaagtttaaccccaaatgtctatgatggatcaacattatatatagtccaccatatatcctattaatttctttaatttaaa 36175461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 119 - 249
Target Start/End: Original strand, 32255138 - 32255268
Alignment:
Q  119 gaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgatannnnnnnaaaagataatgattgaattacgtaggtcta 218  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||| ||  |||||||        |||||||||  |||| ||||   |||||||    
T  32255138 gaccaaccttaagagtggtccaccatagatcctattaattattttaatttcaaccgtttgatttttttgtaaaagataaccattggattagacaggtcta 32255237  T
Q  219 ttttatcttacgatgtaccacaaacacctaa 249  Q
    ||| ||||||||||||||||| |||||||||    
T  32255238 tttaatcttacgatgtaccaccaacacctaa 32255268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 35295815 - 35295907
Alignment:
Q  88 ccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||||||||||  ||||| ||| || | ||||||| ||||||||||||||||||| |||||||||||||||||||||||||  |||||||    
T  35295815 ccgttaactttaaccccaaatatctgtggtggaccaaccttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgat 35295907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 43460803 - 43460739
Alignment:
Q  107 atgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  43460803 atgtctatggtggaccaactttaagagtggtccaccatagatcctattaattattttaatttaaa 43460739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 669388 - 669297
Alignment:
Q  88 ccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||||||||||||| ||||||||||||| | ||||| ||| ||||||||||||||||| |||||||||||| | ||||||||||  |||||||    
T  669388 ccgttaactttaacctcaaatgtctatggtggaccatctt-aagagtggtccaccatagatcctattaattttgttaatttaaaccgtttgat 669297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 68 - 168
Target Start/End: Original strand, 16755967 - 16756067
Alignment:
Q  68 ttattcaaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatt 167  Q
    ||||||||| || |||||||| |||||||||||| ||||||||||||| |  | |||| |||| ||| ||| |||||| |||||||||||||||||||||    
T  16755967 ttattcaaaaaagtctttggctgttaactttaacctcaaatgtctatggtgaaacaaccttaaaagttgtctaccatagatcctattaattattttaatt 16756066  T
Q  168 t 168  Q
    |    
T  16756067 t 16756067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 88 - 171
Target Start/End: Original strand, 2414861 - 2414944
Alignment:
Q  88 ccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    ||||||||||||||  ||||||||||| || ||||||| |||| |||||||||||||| |||||||||||| | ||||||||||    
T  2414861 ccgttaactttaaccccaaatgtctataatggaccaaccttaaaagtggtccaccatagatcctattaattttcttaatttaaa 2414944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 90 - 181
Target Start/End: Original strand, 43441464 - 43441555
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgata 181  Q
    ||||||||||||   ||||||||||| |  |||||| |||||||||||||||||||  ||||||||||||||||||| |||| |||||||||    
T  43441464 gttaactttaaccctaaatgtctatggtgtaccaaccttaagagtggtccaccataagtcctattaattattttaatgtaaactgtttgata 43441555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 11502401 - 11502340
Alignment:
Q  107 atgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaattt 168  Q
    ||||||||| ||||||||| ||||||||||||||||||| |||||| |||||||||||||||    
T  11502401 atgtctatggtagaccaaccttaagagtggtccaccatagatcctagtaattattttaattt 11502340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 46201249 - 46201338
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttga 179  Q
    ||||| ||||||  |||||||||||| |  |||||| ||||||||||||||||||| ||| |||||||||||||||| |||| |||||||    
T  46201249 gttaagtttaaccccaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatataaactgtttga 46201338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 41328351 - 41328428
Alignment:
Q  104 caaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgata 181  Q
    |||||||||||| | || ||||||||| | |||||||||||| ||||||||||||||| |||||||||  ||||||||    
T  41328351 caaatgtctatggtggaacaactttaaaaatggtccaccatagatcctattaattattctaatttaaaccgtttgata 41328428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 180
Target Start/End: Original strand, 44372848 - 44372937
Alignment:
Q  91 ttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||||||||||   ||||||||||  | ||| ||| ||||||||||||||||||| ||||||||||||||||||||| |||  |||||||    
T  44372848 ttaactttaaccctaaatgtctatagtggactaacattaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgat 44372937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 180
Target Start/End: Original strand, 44381704 - 44381793
Alignment:
Q  91 ttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||||||||||   ||||||||||  | ||| ||| ||||||||||||||||||| ||||||||||||||||||||| |||  |||||||    
T  44381704 ttaactttaaccctaaatgtctatagtggactaacattaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgat 44381793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 15992244 - 15992328
Alignment:
Q  81 tctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaa 165  Q
    |||||| | |||||||||||| ||||||||||||| | ||||||| ||||||||| |  |||| | |||||||||||||||||||    
T  15992244 tctttgactgttaactttaacctcaaatgtctatggtggaccaaccttaagagtgatttaccaaagatcctattaattattttaa 15992328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 120 - 249
Target Start/End: Original strand, 22537708 - 22537836
Alignment:
Q  120 accaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgatannnnnnnaaaagataatgattgaattacgtaggtctat 219  Q
    |||||| |||| |||| ||||||||| |||||||||||||||||||||||||  |||||||        |||||  ||  |||| |||| | ||||||||    
T  22537708 accaaccttaatagtgatccaccatagatcctattaattattttaatttaaaccgtttgat-tttttttaaaagggaaccattggattatgcaggtctat 22537806  T
Q  220 tttatcttacgatgtaccacaaacacctaa 249  Q
    |||||||||||||| ||||| |||||||||    
T  22537807 tttatcttacgatgaaccaccaacacctaa 22537836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 39981449 - 39981525
Alignment:
Q  104 caaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||||||||||| | |||||||||||| | |||||||||||| |||| |||||||||| |||||||||  |||||||    
T  39981449 caaatgtctatggtggaccaactttaaaaatggtccaccatagatccaattaattattctaatttaaaccgtttgat 39981525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 13564220 - 13564158
Alignment:
Q  106 aatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaattt 168  Q
    |||||||||| | || || | ||||||||||||||||||| ||||||||||||||||||||||    
T  13564220 aatgtctatggtggatcatccttaagagtggtccaccatagatcctattaattattttaattt 13564158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 40811456 - 40811529
Alignment:
Q  107 atgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||||| | ||||||| ||||||||||||||||||| || ||||||||  ||||||||||||  |||||||    
T  40811456 atgtctatggtggaccaaccttaagagtggtccaccatagattctattaatatttttaatttaaaccgtttgat 40811529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 32256396 - 32256344
Alignment:
Q  88 ccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtcca 140  Q
    |||||||||||||||||||||||||||| | ||||||| |||| |||||||||    
T  32256396 ccgttaactttaacttcaaatgtctatggtggaccaacattaaaagtggtcca 32256344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 33779100 - 33779036
Alignment:
Q  75 aataaatctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtcc 139  Q
    |||||||||||||| ||||| ||||||  |||||||||||| | ||||||| |||||||||||||    
T  33779100 aataaatctttggctgttaagtttaaccacaaatgtctatggtggaccaaccttaagagtggtcc 33779036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 22336130 - 22336176
Alignment:
Q  122 caactttaagagtggtccaccatatatcctattaattattttaattt 168  Q
    |||| |||| |||||||||||||| ||||||||||||||||||||||    
T  22336130 caaccttaaaagtggtccaccatagatcctattaattattttaattt 22336176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 46835838 - 46835875
Alignment:
Q  134 tggtccaccatatatcctattaattattttaatttaaa 171  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  46835838 tggtctaccatatatcctattaattattttaatttaaa 46835875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 47454455 - 47454504
Alignment:
Q  91 ttaactttaacttcaaatgtctatgatagaccaactttaagagtggtcca 140  Q
    ||||||||||||  ||||||||||| ||||||||| ||||||||||||||    
T  47454455 ttaactttaactctaaatgtctatggtagaccaaccttaagagtggtcca 47454504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 11501297 - 11501344
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggt 137  Q
    |||||||||||||||||||||||||| | ||||||| |||| ||||||    
T  11501297 gttaactttaacttcaaatgtctatggtggaccaaccttaaaagtggt 11501344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 13562939 - 13562986
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggt 137  Q
    ||||||||||||||||||||||||| || ||||||| |||| ||||||    
T  13562939 gttaactttaacttcaaatgtctataatggaccaaccttaaaagtggt 13562986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 171
Target Start/End: Complemental strand, 30334641 - 30334559
Alignment:
Q  88 ccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    ||||||| | |||||  |||||||||||   ||||||||||||||   |||||||||| |||||||||||| ||||||||||||    
T  30334641 ccgttaaatctaactctaaatgtctatggaggaccaactttaagaacagtccaccatagatcctattaatt-ttttaatttaaa 30334559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 22115179 - 22115107
Alignment:
Q  73 caaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccata 145  Q
    |||||||||| || |  ||||| ||||||  |||||||||||  | ||||||| |||||||||||||||||||    
T  22115179 caaataaatcnttcggtgttaagtttaaccccaaatgtctatagtggaccaaccttaagagtggtccaccata 22115107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 40509749 - 40509677
Alignment:
Q  73 caaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccata 145  Q
    |||||||||| || |  ||||| ||||||  |||||||||||  | ||||||| |||||||||||||||||||    
T  40509749 caaataaatcattcggtgttaagtttaaccccaaatgtctatagtggaccaaccttaagagtggtccaccata 40509677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 107 - 249
Target Start/End: Original strand, 17837752 - 17837895
Alignment:
Q  107 atgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgatannnnnnnaaaa-gataatgattgaa 205  Q
    ||||||||| | ||| ||| ||||||||||||||||||| |||||||||||||||||||||| ||  |||||||        |||| |||||  |||| |    
T  17837752 atgtctatggtggacaaacattaagagtggtccaccatagatcctattaattattttaatttcaaccgtttgatttttcttaaaaacgataaccattgga 17837851  T
Q  206 ttacgtaggtctattttatcttacgatgtaccacaaacacctaa 249  Q
    ||| | |||||||||||||||||||||||||||| |||| ||||    
T  17837852 ttaggcaggtctattttatcttacgatgtaccaccaacatctaa 17837895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 11967332 - 11967424
Alignment:
Q  88 ccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||||||||||||| ||||||||||||  | ||||||| || |||| |||||| |||| ||| ||||||||||||||||||||| ||||||||    
T  11967332 ccgttaactttaacctcaaatgtctattgtggaccaaccttgagaggggtccatcatagatcatattaattattttaatttaaactgtttgat 11967424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 120 - 249
Target Start/End: Complemental strand, 18346717 - 18346588
Alignment:
Q  120 accaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgatannnnnnnaaaagataatgattgaattacgtaggtctat 219  Q
    |||||| ||||||||||||||| ||| |||||||||||||||||||||||||  |||||||        |||||  ||  |||| |||| | | ||||||    
T  18346717 accaaccttaagagtggtccactataaatcctattaattattttaatttaaaccgtttgatttttttttaaaagtaaaccattggattatgcaagtctat 18346618  T
Q  220 tttatcttacgatgtaccacaaacacctaa 249  Q
    |||||||||||||||||||| |||||||||    
T  18346617 tttatcttacgatgtaccaccaacacctaa 18346588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 12784762 - 12784830
Alignment:
Q  28 ttaataaaattcatgnnnnnnncctttatgtttgtccccattattcaaataaatctttggccgttaact 96  Q
    |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  12784762 ttaataaaattcatgttttagtcctttatgtttgtccccattattcaaataaatctttggccgttaact 12784830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 7311705 - 7311632
Alignment:
Q  107 atgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||||| |  |||||| ||||||||||||||||||| |||||||||||||||||||||||||  |||||||    
T  7311705 atgtctatggtgaaccaaccttaagagtggtccaccataaatcctattaattattttaatttaaaccgtttgat 7311632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 12780607 - 12780651
Alignment:
Q  52 tttatgtttgtccccattattcaaataaatctttggccgttaact 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  12780607 tttatgtttgtccccattattcaaataaatctttggccgttaact 12780651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 127 - 249
Target Start/End: Complemental strand, 29381690 - 29381567
Alignment:
Q  127 ttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttga-tannnnnnnaaaagataatgattgaattacgtaggtctattttatc 225  Q
    ||||||||| ||||||||| |||||||||||||||||||||| ||  |||||| |        |||||||||  |||| |||| | ||||||||||||||    
T  29381690 ttaagagtgatccaccatagatcctattaattattttaatttcaaccgtttgattttttttcaaaaagataaccattggattaggcaggtctattttatc 29381591  T
Q  226 ttacgatgtaccacaaacacctaa 249  Q
    |||||||||||||| |||| ||||    
T  29381590 ttacgatgtaccaccaacatctaa 29381567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 11722918 - 11722994
Alignment:
Q  104 caaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||||||||||| | |||| ||||||| | |||||||||||| ||||||||||||||| |||||||||  |||||||    
T  11722918 caaatgtctatggtggaccgactttaaaaatggtccaccatagatcctattaattattctaatttaaaccgtttgat 11722994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 90 - 180
Target Start/End: Original strand, 12669841 - 12669931
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||||||||||| |||||||| |||| | ||||||| ||||||||||||||||||| ||| ||||| || | ||||| |||| | ||||||    
T  12669841 gttaactttaacctcaaatgtgtatggtggaccaaccttaagagtggtccaccatagatcatattatttttattaatataaactatttgat 12669931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 23397355 - 23397275
Alignment:
Q  88 ccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaattt 168  Q
    ||||||| |||||||||||||||||||| | ||||||| |||| ||| ||||||| |||| | |||||||| | |||||||    
T  23397355 ccgttaaatttaacttcaaatgtctatggtggaccaaccttaaaagtagtccaccgtataccttattaattttgttaattt 23397275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 23392365 - 23392424
Alignment:
Q  122 caactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgata 181  Q
    |||| |||| |||||||||||||| |||||||||||||||||||||| ||  ||||||||    
T  23392365 caaccttaaaagtggtccaccatagatcctattaattattttaatttcaaccgtttgata 23392424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 5187590 - 5187529
Alignment:
Q  119 gaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||| |||| |||||| ||||||| |||||||||||||| ||||||| || ||||||||    
T  5187590 gaccaaccttaaaagtggttcaccatagatcctattaattatattaatttcaactgtttgat 5187529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 32507041 - 32506967
Alignment:
Q  73 caaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatata 147  Q
    |||||||||| ||| | ||||| ||||||  ||||| |||||| | ||||||| |||||||||||| ||||||||    
T  32507041 caaataaatccttgactgttaagtttaaccccaaatatctatggtggaccaaccttaagagtggtctaccatata 32506967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 171
Target Start/End: Original strand, 15728830 - 15728929
Alignment:
Q  72 tcaaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaacttta-agagtggtccaccatatatcctattaattattttaatttaa 170  Q
    |||||||||||||| |  ||||| |||||| |||||| |||||| | ||||||| ||| ||| | |||||||||| | ||||||||||  ||||||||||    
T  15728830 tcaaataaatctttcggtgttaagtttaacctcaaatatctatggtggaccaacattataga-tagtccaccatagaccctattaatttctttaatttaa 15728928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 54164 - 54091
Alignment:
Q  107 atgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||||| | ||||||| |||| |||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  54164 atgtctatggtggaccaaccttaaaagtggtccaccatagatcctattaattattttaatttaaactgtttgat 54091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 72 - 171
Target Start/End: Original strand, 127533 - 127632
Alignment:
Q  72 tcaaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    |||||||||||  || | |||||||||||| ||||||||||||| |  | |||| ||||||||||||||||||| |||||||||||  ||||||||||||    
T  127533 tcaaataaatccctgacagttaactttaacctcaaatgtctatggtgaaacaaccttaagagtggtccaccatagatcctattaatgtttttaatttaaa 127632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 43554 - 43481
Alignment:
Q  107 atgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||||| | ||||||  ||||||||||||||||||| |||||||||||||||||||||||||  |||||||    
T  43554 atgtctatggtggaccaatcttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgat 43481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2071 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 673 - 589
Alignment:
Q  96 tttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    |||||| |||||||| ||| || ||||||| ||||||||||||||||||| | | |||||| | ||||||||||||  |||||||    
T  673 tttaacctcaaatgtatataatggaccaaccttaagagtggtccaccatagaccttattaaattttttaatttaaaccgtttgat 589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 90 - 155
Target Start/End: Original strand, 32688 - 32753
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctatta 155  Q
    |||||||||||| | ||||||||||| | ||||||| ||| |||||||||| |||| |||||||||    
T  32688 gttaactttaaccttaaatgtctatggtggaccaaccttaggagtggtccatcatagatcctatta 32753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 8190 - 8099
Alignment:
Q  88 ccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaattattttaatttaaaatgtttgat 180  Q
    ||||||| ||||||  |||||||||||| | || |||| ||||||| |||||| |||| ||  |||||||||||||||||||||  |||||||    
T  8190 ccgttaattttaaccccaaatgtctatggtggatcaaccttaagag-ggtccatcatagattatattaattattttaatttaaaccgtttgat 8099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 108661 - 108713
Alignment:
Q  119 gaccaactttaagagtggtccaccatatatcctattaattattttaatttaaa 171  Q
    ||||||| |||| |||||||||||||| || |||||||||||| |||||||||    
T  108661 gaccaaccttaaaagtggtccaccatagatgctattaattattataatttaaa 108713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 63146 - 63074
Alignment:
Q  73 caaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccata 145  Q
    ||||||||||  || | ||||| |||||||||||||||||||||| || |||  |||||| ||||||||||||    
T  63146 caaataaatccctgactgttaagtttaacttcaaatgtctatgatggatcaatcttaagaatggtccaccata 63074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 124086 - 124152
Alignment:
Q  90 gttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccatatatcctattaa 156  Q
    ||||| ||||||  ||||| |||||| | ||||||| ||||||||||||||||||| ||| ||||||    
T  124086 gttaagtttaaccccaaatatctatggtggaccaaccttaagagtggtccaccatagatcgtattaa 124152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 145
Target Start/End: Original strand, 21228 - 21300
Alignment:
Q  73 caaataaatctttggccgttaactttaacttcaaatgtctatgatagaccaactttaagagtggtccaccata 145  Q
    |||||||||| || |  ||||| ||||||  |||||||||||| | ||||||| || ||||||||||||||||    
T  21228 caaataaatcattcgttgttaagtttaaccacaaatgtctatggtggaccaaccttcagagtggtccaccata 21300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University