View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7017_high_15 (Length: 486)

Name: NF7017_high_15
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7017_high_15
NF7017_high_15
[»] chr2 (23 HSPs)
chr2 (1-288)||(30078179-30078466)
chr2 (1-263)||(30019652-30019914)
chr2 (1-263)||(30040781-30041043)
chr2 (1-263)||(30110259-30110521)
chr2 (1-263)||(30234919-30235181)
chr2 (37-262)||(30136896-30137121)
chr2 (37-173)||(30045941-30046077)
chr2 (386-475)||(30020147-30020236)
chr2 (386-475)||(30078565-30078654)
chr2 (386-475)||(30103407-30103496)
chr2 (386-475)||(30121636-30121725)
chr2 (386-475)||(30136641-30136730)
chr2 (386-475)||(30040459-30040548)
chr2 (386-475)||(30109937-30110026)
chr2 (386-475)||(30234597-30234686)
chr2 (250-288)||(30020000-30020038)
chr2 (250-288)||(30040657-30040695)
chr2 (250-288)||(30110135-30110173)
chr2 (250-288)||(30121833-30121871)
chr2 (250-288)||(30234795-30234833)
chr2 (250-286)||(30136832-30136868)
chr2 (40-86)||(39324796-39324842)
chr2 (41-86)||(42352251-42352296)
[»] chr8 (1 HSPs)
chr8 (40-100)||(3771638-3771698)
[»] chr5 (7 HSPs)
chr5 (30-115)||(41982520-41982605)
chr5 (40-86)||(4650341-4650387)
chr5 (40-81)||(38734692-38734733)
chr5 (40-86)||(2858210-2858256)
chr5 (40-81)||(2846389-2846430)
chr5 (67-112)||(29302550-29302595)
chr5 (52-112)||(3082689-3082748)
[»] chr6 (3 HSPs)
chr6 (30-80)||(33940956-33941006)
chr6 (46-123)||(2308372-2308448)
chr6 (40-86)||(27991927-27991973)
[»] chr1 (3 HSPs)
chr1 (29-115)||(8245431-8245517)
chr1 (40-115)||(42106999-42107074)
chr1 (40-102)||(1035397-1035458)
[»] chr7 (2 HSPs)
chr7 (34-100)||(38735907-38735973)
chr7 (29-82)||(31446665-31446718)
[»] chr4 (2 HSPs)
chr4 (40-86)||(34121090-34121136)
chr4 (29-86)||(38516122-38516179)
[»] chr3 (2 HSPs)
chr3 (39-115)||(25750837-25750914)
chr3 (50-143)||(49222430-49222523)


Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-156; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 30078179 - 30078466
Alignment:
Q  1 gaacctaaattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30078179 gaacctaaattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtga 30078278  T
Q  101 gtatgtctaaatattgtttattttatgttgtgattatagaagacttacacttaataaactaatccataaatatgaatattattttagttttcatttcagt 200  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30078279 gtatgtctaaaaattgtttaatttatgttgtgattatagaagacttacacttaataaactaatccataaatatgaatattattttagttttcatttcagt 30078378  T
Q  201 gatataaaacactcattagcaaatttgacctaattgtattcattgttttaaatcaactaacagctaacaaataagagatggcaataga 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30078379 gatataaaacactcattagcaaatttgacctaattgtattcattgttttaaatcaactaacagctaacaaataagagatggcaataga 30078466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 30019652 - 30019914
Alignment:
Q  1 gaacctaaattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30019652 gaacctaaattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtga 30019751  T
Q  101 gtatgtctaaatattgtttattttatgttgtgattatagaagacttacacttaataaactaatccataaatatgaatattattttagttttcatttcagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  30019752 gtatgtctaaatattgtttattttatgttgtgattatagaagacttacacttaataaactaatccataaatatcaatattattttagttttcattttagt 30019851  T
Q  201 gatataaaacactcattagcaaatttgacctaattgtattcattgttttaaatcaactaacag 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30019852 gatataaaacactcattagcaaatttgacctaattgtattcattgttttaaatcaactaacag 30019914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 30041043 - 30040781
Alignment:
Q  1 gaacctaaattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30041043 gaacctaaattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatttttgttttaatttttctaatttaatgtga 30040944  T
Q  101 gtatgtctaaatattgtttattttatgttgtgattatagaagacttacacttaataaactaatccataaatatgaatattattttagttttcatttcagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  30040943 gtatgtctaaatattgtttattttatgttgtgattatagaagacttacacttaataaactaatccataaatatcaatattattttagttttcattttagt 30040844  T
Q  201 gatataaaacactcattagcaaatttgacctaattgtattcattgttttaaatcaactaacag 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30040843 gatataaaacactcattagcaaatttgacctaattgtattcattgttttaaatcaactaacag 30040781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 30110521 - 30110259
Alignment:
Q  1 gaacctaaattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30110521 gaacctaaattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatttttgttttaatttttctaatttaatgtga 30110422  T
Q  101 gtatgtctaaatattgtttattttatgttgtgattatagaagacttacacttaataaactaatccataaatatgaatattattttagttttcatttcagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  30110421 gtatgtctaaatattgtttattttatgttgtgattatagaagacttacacttaataaactaatccataaatatcaatattattttagttttcattttagt 30110322  T
Q  201 gatataaaacactcattagcaaatttgacctaattgtattcattgttttaaatcaactaacag 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30110321 gatataaaacactcattagcaaatttgacctaattgtattcattgttttaaatcaactaacag 30110259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 30235181 - 30234919
Alignment:
Q  1 gaacctaaattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30235181 gaacctaaattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatttttgttttaatttttctaatttaatgtga 30235082  T
Q  101 gtatgtctaaatattgtttattttatgttgtgattatagaagacttacacttaataaactaatccataaatatgaatattattttagttttcatttcagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  30235081 gtatgtctaaatattgtttattttatgttgtgattatagaagacttacacttaataaactaatccataaatatcaatattattttagttttcattttagt 30234982  T
Q  201 gatataaaacactcattagcaaatttgacctaattgtattcattgttttaaatcaactaacag 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30234981 gatataaaacactcattagcaaatttgacctaattgtattcattgttttaaatcaactaacag 30234919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 37 - 262
Target Start/End: Complemental strand, 30137121 - 30136896
Alignment:
Q  37 acttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttattttatgttgtgatta 136  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30137121 acttaaatgatgttgattgatgtgatcaaattatttttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttattttatgttgtgatta 30137022  T
Q  137 tagaagacttacacttaataaactaatccataaatatgaatattattttagttttcatttcagtgatataaaacactcattagcaaatttgacctaattg 236  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30137021 tagaagacttacacttaataaactaatccataaatatcaatattattttagttttcatttcagtgatataaaacactcattagcaaatttgacctaattg 30136922  T
Q  237 tattcattgttttaaatcaactaaca 262  Q
    ||||||||||||||||||||||||||    
T  30136921 tattcattgttttaaatcaactaaca 30136896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 37 - 173
Target Start/End: Complemental strand, 30046077 - 30045941
Alignment:
Q  37 acttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttattttatgttgtgatta 136  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30046077 acttaaatgatgttgattgatgtgatcaaattatttttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttattttatgttgtgatta 30045978  T
Q  137 tagaagacttacacttaataaactaatccataaatat 173  Q
    |||||||||||||||||||||||||||||||||||||    
T  30045977 tagaagacttacacttaataaactaatccataaatat 30045941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 386 - 475
Target Start/End: Original strand, 30020147 - 30020236
Alignment:
Q  386 ctaaattgaacacagacacacttttatgccacacgatggtgtttctcttccctttttcttcttccaccaatcatttaatattgtcttcat 475  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30020147 ctaaattgaacacagacacatttttatgccacacgatggtgtttctcttctctttttcttcttccaccaatcatttaatattgtcttcat 30020236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 386 - 475
Target Start/End: Original strand, 30078565 - 30078654
Alignment:
Q  386 ctaaattgaacacagacacacttttatgccacacgatggtgtttctcttccctttttcttcttccaccaatcatttaatattgtcttcat 475  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30078565 ctaaattgaacacagacacatttttatgccacacgatggtgtttctcttctctttttcttcttccaccaatcatttaatattgtcttcat 30078654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 386 - 475
Target Start/End: Complemental strand, 30103496 - 30103407
Alignment:
Q  386 ctaaattgaacacagacacacttttatgccacacgatggtgtttctcttccctttttcttcttccaccaatcatttaatattgtcttcat 475  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30103496 ctaaattgaacacagacacatttttatgccacacgatggtgtttctcttctctttttcttcttccaccaatcatttaatattgtcttcat 30103407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 386 - 475
Target Start/End: Complemental strand, 30121725 - 30121636
Alignment:
Q  386 ctaaattgaacacagacacacttttatgccacacgatggtgtttctcttccctttttcttcttccaccaatcatttaatattgtcttcat 475  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30121725 ctaaattgaacacagacacatttttatgccacacgatggtgtttctcttctctttttcttcttccaccaatcatttaatattgtcttcat 30121636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 386 - 475
Target Start/End: Complemental strand, 30136730 - 30136641
Alignment:
Q  386 ctaaattgaacacagacacacttttatgccacacgatggtgtttctcttccctttttcttcttccaccaatcatttaatattgtcttcat 475  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30136730 ctaaattgaacacagacacatttttatgccacacgatggtgtttctcttctctttttcttcttccaccaatcatttaatattgtcttcat 30136641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 386 - 475
Target Start/End: Complemental strand, 30040548 - 30040459
Alignment:
Q  386 ctaaattgaacacagacacacttttatgccacacgatggtgtttctcttccctttttcttcttccaccaatcatttaatattgtcttcat 475  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  30040548 ctaaattgaacacagacacatttttatgccacacgatggtgtttctcttctctttttcttcttccaccaatcatttactattgtcttcat 30040459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 386 - 475
Target Start/End: Complemental strand, 30110026 - 30109937
Alignment:
Q  386 ctaaattgaacacagacacacttttatgccacacgatggtgtttctcttccctttttcttcttccaccaatcatttaatattgtcttcat 475  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  30110026 ctaaattgaacacagacacatttttatgccacacgatggtgtttctcttctctttttcttcttccaccaatcatttactattgtcttcat 30109937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 386 - 475
Target Start/End: Complemental strand, 30234686 - 30234597
Alignment:
Q  386 ctaaattgaacacagacacacttttatgccacacgatggtgtttctcttccctttttcttcttccaccaatcatttaatattgtcttcat 475  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  30234686 ctaaattgaacacagacacatttttatgccacacgatggtgtttctcttctctttttcttcttccaccaatcatttactattgtcttcat 30234597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 30020000 - 30020038
Alignment:
Q  250 aaatcaactaacagctaacaaataagagatggcaataga 288  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30020000 aaatcaactaacagctaacaaataagagatggcaataga 30020038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 30040695 - 30040657
Alignment:
Q  250 aaatcaactaacagctaacaaataagagatggcaataga 288  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30040695 aaatcaactaacagctaacaaataagagatggcaataga 30040657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 30110173 - 30110135
Alignment:
Q  250 aaatcaactaacagctaacaaataagagatggcaataga 288  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30110173 aaatcaactaacagctaacaaataagagatggcaataga 30110135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 30121871 - 30121833
Alignment:
Q  250 aaatcaactaacagctaacaaataagagatggcaataga 288  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30121871 aaatcaactaacagctaacaaataagagatggcaataga 30121833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 30234833 - 30234795
Alignment:
Q  250 aaatcaactaacagctaacaaataagagatggcaataga 288  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30234833 aaatcaactaacagctaacaaataagagatggcaataga 30234795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 30136868 - 30136832
Alignment:
Q  250 aaatcaactaacagctaacaaataagagatggcaata 286  Q
    |||||||||||||||||||||||||||||||||||||    
T  30136868 aaatcaactaacagctaacaaataagagatggcaata 30136832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 39324842 - 39324796
Alignment:
Q  40 taaatgatgttgattgatgtgatcaaattatctttgttttaattttt 86  Q
    |||||||| ||||||||||||||| |||||| |||||||||| ||||    
T  39324842 taaatgatattgattgatgtgatctaattatttttgttttaaatttt 39324796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 42352251 - 42352296
Alignment:
Q  41 aaatgatgttgattgatgtgatcaaattatctttgttttaattttt 86  Q
    ||||| |||||||||||||||| | ||||| |||||||||||||||    
T  42352251 aaatgttgttgattgatgtgattacattatttttgttttaattttt 42352296  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 3771638 - 3771698
Alignment:
Q  40 taaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtga 100  Q
    ||||||||||||||||||||||| | ||||| ||||||||||||||| | |||||||||||    
T  3771638 taaatgatgttgattgatgtgattatattatttttgttttaatttttttcatttaatgtga 3771698  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 41982520 - 41982605
Alignment:
Q  30 agaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatatt 115  Q
    ||||||||  ||||||||||||||||||| |||| |||||| |||||||||| |||| | |||| |||||||| || | |||||||    
T  41982520 agaaaaaaactaaatgatgttgattgatgggatctaattatttttgttttaaattttttcatttgatgtgagtgtgcccaaatatt 41982605  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 4650341 - 4650387
Alignment:
Q  40 taaatgatgttgattgatgtgatcaaattatctttgttttaattttt 86  Q
    |||||||||||||||||||||||| |||||| |||||||||| ||||    
T  4650341 taaatgatgttgattgatgtgatctaattatttttgttttaaatttt 4650387  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 38734692 - 38734733
Alignment:
Q  40 taaatgatgttgattgatgtgatcaaattatctttgttttaa 81  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  38734692 taaatgatgttgattgatgtgatctaattatttttgttttaa 38734733  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 2858210 - 2858256
Alignment:
Q  40 taaatgatgttgattgatgtgatcaaattatctttgttttaattttt 86  Q
    |||||||||||||||||||||||| | |||| |||||||||| ||||    
T  2858210 taaatgatgttgattgatgtgatctatttatttttgttttaaatttt 2858256  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 2846389 - 2846430
Alignment:
Q  40 taaatgatgttgattgatgtgatcaaattatctttgttttaa 81  Q
    ||||||||||||||||| |||||| |||||| ||||||||||    
T  2846389 taaatgatgttgattgaggtgatctaattatttttgttttaa 2846430  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 29302550 - 29302595
Alignment:
Q  67 ttatctttgttttaatttttctaatttaatgtgagtatgtctaaat 112  Q
    |||| ||||||||||||||| |||||| ||||||||||| ||||||    
T  29302550 ttatttttgttttaatttttttaattttatgtgagtatgcctaaat 29302595  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 3082748 - 3082689
Alignment:
Q  52 attgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaat 112  Q
    |||||| |||| ||||||| ||||||||||||||| | |||| |||||||| |||||||||    
T  3082748 attgatatgattaaattatttttgttttaattttt-tcattttatgtgagtgtgtctaaat 3082689  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 33940956 - 33941006
Alignment:
Q  30 agaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgtttta 80  Q
    |||| ||| |||||||||||||||||||||||| ||||||| |||||||||    
T  33940956 agaataaaattaaatgatgttgattgatgtgattaaattatttttgtttta 33941006  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 2308372 - 2308448
Alignment:
Q  46 atgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttattt 123  Q
    ||||||||||||||||| | ||||| ||||||||||||||| | |||| |||||||| || | ||||||| |||||||    
T  2308372 atgttgattgatgtgattatattatttttgttttaattttt-tgatttgatgtgagtgtgcccaaatattttttattt 2308448  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 27991927 - 27991973
Alignment:
Q  40 taaatgatgttgattgatgtgatcaaattatctttgttttaattttt 86  Q
    |||| |||||||||||||||||| | ||||| |||||||||||||||    
T  27991927 taaaagatgttgattgatgtgattatattatttttgttttaattttt 27991973  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 8245431 - 8245517
Alignment:
Q  29 gagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatatt 115  Q
    ||||| ||| ||||||||||||||||||||||||  |||||| ||||||| || ||||   |||| |||||||| | ||||||||||    
T  8245431 gagaataaaattaaatgatgttgattgatgtgatttaattatttttgtttaaaatttttccatttgatgtgagtgtttctaaatatt 8245517  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 42107074 - 42106999
Alignment:
Q  40 taaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatatt 115  Q
    ||||||||||| |||||||||||  |||||| |||||||||| ||||   |||| |||||||| |||| |||||||    
T  42107074 taaatgatgttaattgatgtgatttaattatttttgttttaaatttttccatttgatgtgagtgtgtccaaatatt 42106999  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 1035458 - 1035397
Alignment:
Q  40 taaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagt 102  Q
    |||||||| | |||| |||||||| |||||| ||||||||||||||| | |||||||||||||    
T  1035458 taaatgatatagattaatgtgatctaattatttttgttttaattttt-ttatttaatgtgagt 1035397  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 38735907 - 38735973
Alignment:
Q  34 aaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtga 100  Q
    |||| ||||||||||||||||||||||||  |||||| |||| ||||| |||| | |||| ||||||    
T  38735907 aaaaattaaatgatgttgattgatgtgatttaattatttttgctttaaattttttcatttgatgtga 38735973  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 31446665 - 31446718
Alignment:
Q  29 gagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaat 82  Q
    ||||| ||| ||||||||||||||||||| |||  ||||||| |||||||||||    
T  31446665 gagaataaaattaaatgatgttgattgatatgaataaattatttttgttttaat 31446718  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 34121136 - 34121090
Alignment:
Q  40 taaatgatgttgattgatgtgatcaaattatctttgttttaattttt 86  Q
    ||||||||||||||||||||||| | ||||| |||||||||| ||||    
T  34121136 taaatgatgttgattgatgtgattatattatttttgttttaactttt 34121090  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 38516122 - 38516179
Alignment:
Q  29 gagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaattttt 86  Q
    ||||| ||| ||||||||||||||||||||||||  |||||  |||||||| ||||||    
T  38516122 gagaataaaattaaatgatgttgattgatgtgatttaattaattttgtttttattttt 38516179  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 25750914 - 25750837
Alignment:
Q  39 ttaaatgatgttgattgatgtgatcaaatta-tctttgtttt-aatttttctaatttaatgtgagtatgtctaaatatt 115  Q
    ||||||||||||||||||||| ||  ||||| | |||||||| ||||||||| |||| |||||||| ||||||||||||    
T  25750914 ttaaatgatgttgattgatgtaatttaattattttttgttttaaatttttct-atttgatgtgagtgtgtctaaatatt 25750837  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 143
Target Start/End: Original strand, 49222430 - 49222523
Alignment:
Q  50 tgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttattttatgttgtgattatagaaga 143  Q
    ||||||||||||| ||| ||| ||| ||||||| ||| | |||| |||||||| | | |||| ||| ||||||| | |||||||||||| ||||    
T  49222430 tgattgatgtgattaaactatttttattttaatatttttcatttgatgtgagtgtatttaaacattttttatttaaagttgtgattataaaaga 49222523  T

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