View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_high_17 (Length: 464)
Name: NF7017_high_17
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 7e-87; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 210 - 376
Target Start/End: Complemental strand, 12045373 - 12045207
Alignment:
| Q |
210 |
tcatgtggtctgtgtaagatcaatggtacgcaacatcatatgaaaatctcagaaaaggattttcttcatatggtaccgcaagcaacaacgaatccatgaa |
309 |
Q |
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| T |
12045373 |
tcatgtggtctgtgtaagatcaatggtacgcaacatcatatgaaaatctcagaaaaggattttcttcatatggtaccgcaagcaacaacgaatccatgaa |
12045274 |
T |
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| Q |
310 |
ttctatagacatgcaaacatgtgaagtgatggagaagaagcacatgagatgagagggaggaacagtg |
376 |
Q |
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| T |
12045273 |
ttctatagacatacaaacatgtgaagtgatggagaagaagcacatgagatgagagggaggaacagtg |
12045207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 13 - 155
Target Start/End: Complemental strand, 12045570 - 12045428
Alignment:
| Q |
13 |
gttaggtacaatttaggattccttgaaaatcagataaaagtaaagcaacaatatcgtgtctattaggagattaacgcctcatatgaagaaacaacctaaa |
112 |
Q |
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| T |
12045570 |
gttaggtacaatttaggattccttgaaaatcagataaaagtaaagcaacaatatcgtgtctattaggagattaacgcctcatatgaagaaacaacctaaa |
12045471 |
T |
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| Q |
113 |
tttacattattaagacaattcatttttgggcttcataggatat |
155 |
Q |
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| T |
12045470 |
tttacattattaagacaattcatttttgggcttcataggatat |
12045428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 405 - 450
Target Start/End: Complemental strand, 12045208 - 12045163
Alignment:
| Q |
405 |
tggacaaatatcaccaaaataaaaattaatagaacaaatgttgtga |
450 |
Q |
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| T |
12045208 |
tggacaaatatcgccaaaataaaaattaatagaacaaatgttgtga |
12045163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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