View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_high_21 (Length: 443)
Name: NF7017_high_21
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Complemental strand, 40723218 - 40722803
Alignment:
| Q |
18 |
gggaggacatcggaggccttgagaatgtcaagcgtgaactgcaagaggtcagaaatctttcctagtacttaattacaccttatttccttaccaatattat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40723218 |
gggaggacatcggaggccttgagaatgtcaagcgtgaactgcaagaggtcagaaatctttcttagtacttaattacaccttatttccttaccaatattat |
40723119 |
T |
|
| Q |
118 |
ctatttctgattttggttaatgtgtacgcagactgttcaatatccagttgagcacccggaaaagtttgagaagtttgggatgtcaccatcaaaaggagtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40723118 |
ctatttctgattttggttaatgtgtacgcagactgttcaatatccagttgagcacccggaaaagtttgagaagtttgggatgtcaccatcaaaaggagtt |
40723019 |
T |
|
| Q |
218 |
ctcttctatggtcctccgggatgtggaaaaactttgttagccaaagcaattgctaatgaatgtcaagctaacttcatcagtatcaaaggcccagaattgc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| | |
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| T |
40723018 |
ctcttctatggtcctccgggatgtggaaaaactttgttagccaaagcaattgctaatgaatgtcaagctaacttcatcagtataaaaggcctagaattac |
40722919 |
T |
|
| Q |
318 |
ttacaatgtggtttggtgaaagtgaggccaatgttagggaaatatttgacaaggctagacaatcagctccatgtgtcctcttttttgatgagcttgactc |
417 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40722918 |
ttacaatgtggtttggtgaaagtgaagccaatgttagggaaatttttgacaaggctagacaatcagctccatgtgtcctcttttttgatgagcttgattc |
40722819 |
T |
|
| Q |
418 |
cattgccacacaggtt |
433 |
Q |
| |
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||||||||| |||||| |
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| T |
40722818 |
cattgccactcaggtt |
40722803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 40666787 - 40667202
Alignment:
| Q |
18 |
gggaggacatcggaggccttgagaatgtcaagcgtgaactgcaagaggtcagaaatctttcctagtacttaattacaccttatttccttaccaatattat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||| | | ||| |
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| T |
40666787 |
gggaggacatcggaggccttgagaatgtcaagcgtgaactgcaagaggtcataaatctttcctactacttaattacacctgatttccttactagttttac |
40666886 |
T |
|
| Q |
118 |
ctatttctgattttggttaatgtgtacgcagactgttcaatatccagttgagcacccggaaaagtttgagaagtttgggatgtcaccatcaaaaggagtt |
217 |
Q |
| |
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|| ||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
40666887 |
ctgtttctgattttggtttgtgtgtacgtagactgttcaatatccggttgagcacccggaaaagtttgagaagtttgggatgtcaccatccaaaggagtt |
40666986 |
T |
|
| Q |
218 |
ctcttctatggtcctccgggatgtggaaaaactttgttagccaaagcaattgctaatgaatgtcaagctaacttcatcagtatcaaaggcccagaattgc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
40666987 |
ctcttctatggtcctccgggatgtggaaaaactttgttagccaaagcaattgctaatgaatgtcaagctaacttcatcagtataaaaggcccagagttgc |
40667086 |
T |
|
| Q |
318 |
ttacaatgtggtttggtgaaagtgaggccaatgttagggaaatatttgacaaggctagacaatcagctccatgtgtcctcttttttgatgagcttgactc |
417 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40667087 |
ttacaatgtggtttggtgaaagtgatgccaatgttagggaaatttttgacaaggctagacaatcagctccatgtgtcctcttttttgatgagcttgactc |
40667186 |
T |
|
| Q |
418 |
cattgccacacaggtt |
433 |
Q |
| |
|
||||||||| |||||| |
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|
| T |
40667187 |
cattgccactcaggtt |
40667202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 8e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 145 - 433
Target Start/End: Original strand, 27978237 - 27978525
Alignment:
| Q |
145 |
gcagactgttcaatatccagttgagcacccggaaaagtttgagaagtttgggatgtcaccatcaaaaggagttctcttctatggtcctccgggatgtgga |
244 |
Q |
| |
|
||||||||||||||||||||| || ||||| || || ||||||||||||||||||||||| ||||| |||||||| |||||||||||||| || ||||| |
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| T |
27978237 |
gcagactgttcaatatccagtggaacaccctgagaaatttgagaagtttgggatgtcaccttcaaagggagttctgttctatggtcctcctggttgtggt |
27978336 |
T |
|
| Q |
245 |
aaaactttgttagccaaagcaattgctaatgaatgtcaagctaacttcatcagtatcaaaggcccagaattgcttacaatgtggtttggtgaaagtgagg |
344 |
Q |
| |
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||||| | || |||||||| ||||| |||||||||||||| |||||||| ||||||||||| || || |||| |||||||||||||| |||||||||| |
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| T |
27978337 |
aaaacccttttggccaaagctattgccaatgaatgtcaagcaaacttcattagtatcaaaggtcccgagctgctcacaatgtggtttggagaaagtgagg |
27978436 |
T |
|
| Q |
345 |
ccaatgttagggaaatatttgacaaggctagacaatcagctccatgtgtcctcttttttgatgagcttgactccattgccacacaggtt |
433 |
Q |
| |
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| ||||| |||||||| |||||||| ||| | || |||||||||||||| || |||||||| ||||| || ||||| || |||||| |
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| T |
27978437 |
ctaatgtgagggaaatttttgacaaagctcgtggttctgctccatgtgtccttttctttgatgaacttgattctattgcaactcaggtt |
27978525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 145 - 433
Target Start/End: Complemental strand, 41092097 - 41091809
Alignment:
| Q |
145 |
gcagactgttcaatatccagttgagcacccggaaaagtttgagaagtttgggatgtcaccatcaaaaggagttctcttctatggtcctccgggatgtgga |
244 |
Q |
| |
|
||||||||| ||||||||||| || ||||| |||||||||||||||||||| ||||| || || || |||||||| |||||||||||||| |||||||| |
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| T |
41092097 |
gcagactgtccaatatccagtggaacaccctgaaaagtttgagaagtttggaatgtcgccttcgaagggagttcttttctatggtcctcctggatgtggt |
41091998 |
T |
|
| Q |
245 |
aaaactttgttagccaaagcaattgctaatgaatgtcaagctaacttcatcagtatcaaaggcccagaattgcttacaatgtggtttggtgaaagtgagg |
344 |
Q |
| |
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||||| | || || ||||| ||||| |||||||| || || ||||| |||||||||||||| || || | || |||||||||||||| |||||||||| |
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| T |
41091997 |
aaaacactattggcaaaagctattgccaatgaatgccaggcaaactttatcagtatcaaaggtcccgagctactcacaatgtggtttggagaaagtgagg |
41091898 |
T |
|
| Q |
345 |
ccaatgttagggaaatatttgacaaggctagacaatcagctccatgtgtcctcttttttgatgagcttgactccattgccacacaggtt |
433 |
Q |
| |
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| || || |||||||| ||||||||||| | || |||||||||||||| || |||||||| |||||||||||||| || |||||| |
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|
| T |
41091897 |
caaacgtgagggaaatttttgacaaggcccgtggttctgctccatgtgtcctattctttgatgaacttgactccattgcaactcaggtt |
41091809 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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