View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7017_high_22 (Length: 440)
Name: NF7017_high_22
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_high_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 2 - 424
Target Start/End: Complemental strand, 34145068 - 34144646
Alignment:
| Q |
2 |
caatgtttcgcaatcaacaagtacaagtgtgtagttcttgtactcaccactgtagattctttgatcactttcaacgaacaaaatctacctcgcccaactc |
101 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34145068 |
caatggttcgcaatcaacaagtaaaagtgtgtagttcttgtactcaccactgtagattctttgatcactttcaacgaacaaaatctacctcgcccaactc |
34144969 |
T |
|
| Q |
102 |
tttctacaacctcatgctttatcaacgagatttccaagttttggtacttcaacatcttcctcaataatttactttccttttcagtgttgaaacaaaatgt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34144968 |
tttctacaacctcatgctttatcaacgagatttccaagttttggtacttcaacatcttcctcaataatttactttccttttcagtgttgaaacaaaatgt |
34144869 |
T |
|
| Q |
202 |
taagaacatgcatgttacagatcttcttgcaaaatgtgaatctatttttgagtttgtatttatgatgatgctgcatatttttaacatctttttaaactga |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34144868 |
taagaacatgcatgttacagatcttcttgcaaaatgtgaatctgtttttgagtttgtatttatgatgatgctgcatatttttaacatctttttaaactga |
34144769 |
T |
|
| Q |
302 |
ctgcaggatcttccttctaagttaaatcctactatgtcattgttggttgatcagaaaatcaatctcgaggattcaaccggtaagagatgggttataacaa |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
34144768 |
ctgcaggatcttccttctaagttaaatcctactatgtcattgttggttgatcagaaaatcaatcttgaggattcaaccggtaagagatgggctataacag |
34144669 |
T |
|
| Q |
402 |
tttcagaagttgatggttctttt |
424 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
34144668 |
tatcagaagttgatggttctttt |
34144646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University