View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_high_24 (Length: 409)
Name: NF7017_high_24
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_high_24 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 9 - 409
Target Start/End: Complemental strand, 11856074 - 11855673
Alignment:
| Q |
9 |
aattattctagttacatgataggagtacaaaactaataatgcctactgtattataaaagtgatgatcctatcatataaaataatttctttctgaacatct |
108 |
Q |
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| T |
11856074 |
aattattctagttacatgataggagtacaaaactaataatgcctactgtattataaaagtgatgatcctatcatataaaataatttctttctgaacatct |
11855975 |
T |
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| Q |
109 |
aaacatacttggttgtactaaagctaatgctttttctttttgctgcagggtgatgctgatatcttttttcctacagacttctggcttttagaacggattg |
208 |
Q |
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| T |
11855974 |
aaacatacttggttgtactaaagctaatgccttttctttttgctgcagggtgatgctgatatcttttttcctacagacttctggcttttagaacagattg |
11855875 |
T |
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| Q |
209 |
atcattattgttctgggtggctaaaacttcaagacgatcaatcatcgaaaaaaggaaagaaaaggagaacaataacggttagctctattgtcttatcctt |
308 |
Q |
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| T |
11855874 |
atcattattgttctgggtggttaaaacttcaagacgatcaatcatcgaaaaaaggaaagaaaaggagaacaataacggttagctctattgtcttatcctt |
11855775 |
T |
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| Q |
309 |
tataacattataacattattatcacatctttggacacaagacctcaagcaaatgacagacaaaagttgc-gtgcttgggtctctaaacaaatcctttttt |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11855774 |
tataacattataacattattatcacatctttggacacaagacctcaagcaaatgacagacaaaagttgcagtgcttgggtctctaaacaaatcctttttt |
11855675 |
T |
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| Q |
408 |
ga |
409 |
Q |
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|| |
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| T |
11855674 |
ga |
11855673 |
T |
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