View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7017_high_26 (Length: 387)
Name: NF7017_high_26
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_high_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 30048649 - 30049019
Alignment:
| Q |
1 |
aaatgacggacctgggattgatgaagtattttttgggaatggaattgcatcagcttgatgatggaatatttctttcacaaaagaaatatgctaatgatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30048649 |
aaatgacggacctgggattgatgaagtattttttgggaatggaattgcatcagcttgatgatggaatatttctttcacaaaagaaatatgctaatgatgt |
30048748 |
T |
|
| Q |
101 |
gctgaaaaaattcaaattggagagttgtaaatctgtttcaacacctcttgctgtaaatgaaaaactctcaaaatctgatggagatgctaaggcagatgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30048749 |
gctgaaaaaattcaaattggagagttgtaaatctgtttcaacacctcttgctgtaaatgaaaaactctcaaaatctgatggagatgctaaggcagatgtt |
30048848 |
T |
|
| Q |
201 |
actcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcatgcattcac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30048849 |
actcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcatgcattcac |
30048948 |
T |
|
| Q |
301 |
caagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatt |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30048949 |
caagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatt |
30049019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 7161006 - 7161376
Alignment:
| Q |
1 |
aaatgacggacctgggattgatgaagtattttttgggaatggaattgcatcagcttgatgatggaatatttctttcacaaaagaaatatgctaatgatgt |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7161006 |
aaatgacggtgctgggattgatgaagtattttttgggaatggaattgcatcaacttgatgatggaatatttctttcacaaaagaaatatgctaatgatgt |
7161105 |
T |
|
| Q |
101 |
gctgaaaaaattcaaattggagagttgtaaatctgtttcaacacctcttgctgtaaatgaaaaactctcaaaatctgatggagatgctaaggcagatgtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7161106 |
tctgaaaaaattcaaattggagagttgtaagtctgtttcaacacctcttgctgtaaatgaaaaactctcgaaatctgatggagatgctaaggcagatgtt |
7161205 |
T |
|
| Q |
201 |
actcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcatgcattcac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
7161206 |
actcaatataggagtttgattggttgtcttctttacttgactgcaactagactagatttgatgttctctactagtttgctttcaaggttcatgcattcac |
7161305 |
T |
|
| Q |
301 |
caagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatt |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7161306 |
caagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatt |
7161376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 197366 - 196996
Alignment:
| Q |
1 |
aaatgacggacctgggattgatgaagtattttttgggaatggaattgcatcagcttgatgatggaatatttctttcacaaaagaaatatgctaatgatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
197366 |
aaatgacggacctgggattgatgaagtattttttgggaatggaattgcatcagcttgatgatggaatatttctttcacaaaagaaatatgctaatgatgt |
197267 |
T |
|
| Q |
101 |
gctgaaaaaattcaaattggagagttgtaaatctgtttcaacacctcttgctgtaaatgaaaaactctcaaaatctgatggagatgctaaggcagatgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
197266 |
gctgaaaaaattcaaattggagagttgtaaatctgtttcaacacctcttgctgtaaatgaaaaactctcaaaatctgatggagatgctaaggcagatgtt |
197167 |
T |
|
| Q |
201 |
actcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcatgcattcac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
197166 |
actcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcatgcattcac |
197067 |
T |
|
| Q |
301 |
caagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatt |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
197066 |
caagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatt |
196996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 3944903 - 3945273
Alignment:
| Q |
1 |
aaatgacggacctgggattgatgaagtattttttgggaatggaattgcatcagcttgatgatggaatatttctttcacaaaagaaatatgctaatgatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3944903 |
aaatgacggacctgggattgatgaagtattttttgggaatggaattgcatcagcttgatgatggaatatttctttcacaaaagaaatatgctaatgatgt |
3945002 |
T |
|
| Q |
101 |
gctgaaaaaattcaaattggagagttgtaaatctgtttcaacacctcttgctgtaaatgaaaaactctcaaaatctgatggagatgctaaggcagatgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945003 |
gctgaaaaaattcaaattggagagttgtaaatctgtttcaacacctcttgctgtaaatgaaaaactctcaaaatctgatggagatgctaaggcagatgtt |
3945102 |
T |
|
| Q |
201 |
actcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcatgcattcac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945103 |
actcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcatgcattcac |
3945202 |
T |
|
| Q |
301 |
caagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatt |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945203 |
caagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatt |
3945273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 39950527 - 39950157
Alignment:
| Q |
1 |
aaatgacggacctgggattgatgaagtattttttgggaatggaattgcatcagcttgatgatggaatatttctttcacaaaagaaatatgctaatgatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39950527 |
aaatgacggacctgggattgatgaagtattttttgggaatggaattgcatcagcttgatgatggaatatttctttcacaaaagaaatatgctaatgatgt |
39950428 |
T |
|
| Q |
101 |
gctgaaaaaattcaaattggagagttgtaaatctgtttcaacacctcttgctgtaaatgaaaaactctcaaaatctgatggagatgctaaggcagatgtt |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39950427 |
gcttaaaaaattcaaattggagagttgtaaatctgtttcaacacctcttgctgtaaatgaaaaactctcaaaatctgatggagatgctaaggcagatgtt |
39950328 |
T |
|
| Q |
201 |
actcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcatgcattcac |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39950327 |
actcaatataggagtttgataggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcatgcattcac |
39950228 |
T |
|
| Q |
301 |
caagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatt |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39950227 |
caagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatt |
39950157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 22364531 - 22364901
Alignment:
| Q |
1 |
aaatgacggacctgggattgatgaagtattttttgggaatggaattgcatcagcttgatgatggaatatttctttcacaaaagaaatatgctaatgatgt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22364531 |
aaatgacggatctgggattgatgaagtattttttgggaatggaattgcatcaacttgatgatggaatatttctttcacaaaagaaatatgctaatgatgt |
22364630 |
T |
|
| Q |
101 |
gctgaaaaaattcaaattggagagttgtaaatctgtttcaacacctcttgctgtaaatgaaaaactctcaaaatctgatggagatgctaaggcagatgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22364631 |
gctgaaaaaattcaaattggagagttgtaaatctgtttcaacacctcttgctgtaaatgaaaaactctcaaaatctgatggagatgctaaggcagatgtt |
22364730 |
T |
|
| Q |
201 |
actcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcatgcattcac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22364731 |
actcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttcaaggttcatgcattcac |
22364830 |
T |
|
| Q |
301 |
caagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatt |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22364831 |
caagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatt |
22364901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 305
Target Start/End: Original strand, 22134777 - 22134833
Alignment:
| Q |
249 |
agaccagatttgatgttctctgctagtttgctttctaggttcatgcattcaccaagt |
305 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||||| ||||| ||||| || |||||| |
|
|
| T |
22134777 |
agaccagatttgatgttttctacaagtttgctttcaaggtttatgcaatctccaagt |
22134833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 305
Target Start/End: Complemental strand, 17387577 - 17387521
Alignment:
| Q |
249 |
agaccagatttgatgttctctgctagtttgctttctaggttcatgcattcaccaagt |
305 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||||| ||||| ||||| || |||||| |
|
|
| T |
17387577 |
agaccagatttgatgttttctacaagtttgctttcaaggtttatgcaatctccaagt |
17387521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University