View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7017_high_29 (Length: 369)
Name: NF7017_high_29
Description: NF7017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7017_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 350
Target Start/End: Original strand, 39070594 - 39070931
Alignment:
| Q |
13 |
aatatttttcccgatttttagcatgagtggtcggtacnnnnnnnncatatatgagtagtgggaggagctttaaaaatgaatatggtaagaggagttacac |
112 |
Q |
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||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39070594 |
aatatttttcccgatttttagcatgagtggttggtacaaaaaaaacacatatgagtagtgggaggagctttaaaaatgaatatggtaaaaggagttacac |
39070693 |
T |
|
| Q |
113 |
aattttcgtgtaaatttttctagacttcaatgattcaaacaatttttacttgaataaatagtcctttcacaactaatttgtttacaannnnnnnnaatga |
212 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39070694 |
aatttatgtgtaaatttttctaggcttcaatgattcaaacaatttttacttgaataaatagtcctttcacaactaatttgtttacaattttttttaatga |
39070793 |
T |
|
| Q |
213 |
catcttatttttaccttaatttgtattctctactttgaagagagatatttgaagggatagacaaaactcacttcttaagcaccccttcaaatcttcctca |
312 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39070794 |
catcttatttttaccttaatttgtatcctctactttgaagagagatatttgaagggatagacaaaactcacttcttaagcaccccttcaaatcttcctca |
39070893 |
T |
|
| Q |
313 |
ctttatgaatatgagcaatcattgttttgcttcctaac |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
39070894 |
ctttatgaatatgagcaatcattgttttgcttcctaac |
39070931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 13 - 350
Target Start/End: Original strand, 43504888 - 43505224
Alignment:
| Q |
13 |
aatatttttcccgatttttagcatgagtggtcggtacnnnnnnnncatatatgagtagtgggaggagctttaaaaatgaatatggtaagaggagttacac |
112 |
Q |
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|||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43504888 |
aatatttttcccgatttttagcatgagtggtcagtacaaaaaaa-cacatatgagtagtgggaggagctttaaaaatgaatatggtaaaaggagttacac |
43504986 |
T |
|
| Q |
113 |
aattttcgtgtaaatttttctagacttcaatgattcaaacaatttttacttgaataaatagtcctttcacaactaatttgtttacaannnnnnnnaatga |
212 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43504987 |
aattttcgtgtaaatttttctagacttcaatgattcaaacaatttttacttgaataaatagtcctttcacaactaatttgtttacaattgtttttaatga |
43505086 |
T |
|
| Q |
213 |
catcttatttttaccttaatttgtattctctactttgaagagagatatttgaagggatagacaaaactcacttcttaagcaccccttcaaatcttcctca |
312 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
43505087 |
catcttatttttaccttaatttgtatcctctactttgaagagagatattttaagggatagacaaaactcacctcttaagcaccccttcaaatcttcctta |
43505186 |
T |
|
| Q |
313 |
ctttatgaatatgagcaatcattgttttgcttcctaac |
350 |
Q |
| |
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| T |
43505187 |
ctttatgaatatgagcaatcgttgttttgcttcctaac |
43505224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 350
Target Start/End: Complemental strand, 349070 - 348742
Alignment:
| Q |
13 |
aatatttttcccgatttttagcatgagtggtcggtacnnnnnnnncatatatgagtagtgggaggagctttaaaaatgaatatggtaagaggagttacac |
112 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||| || || |||||||||||||||||| |||||||||| | | |||||||||| |
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| T |
349070 |
aatatttatcccgatttttagcatgagtggtcggtacaaaaaaa-cacat-tgagtagtgggaggagct-----aatgaatatgtttaaaggagttaca- |
348979 |
T |
|
| Q |
113 |
aattttcgtgtaaatttttctagacttcaatgattcaaacaatttttacttgaataaatagtcctttcacaactaa-tttgtttacaannnnnnnnaatg |
211 |
Q |
| |
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|||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||| || ||||||||||||| ||| ||||||| |||| |
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| T |
348978 |
aattttcgcttaaatttttctagacttcaatggttcaaacaatttttacttgtataaattgttctttcacaactaattttttttacaattatttttaatg |
348879 |
T |
|
| Q |
212 |
acatcttatttttaccttaatttgtattctctactttgaagagagatatttgaagggatagacaaaactcacttcttaagcaccccttcaaatcttcctc |
311 |
Q |
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||||| ||||||||||| ||| ||||| |||||| ||| |||||||||| |||||||||||||||||| | ||| | | |||||||||||||||| |
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| T |
348878 |
acatcatatttttacctgaatatgtatcctctaccatga--agagatattttaagggatagacaaaactcgccccttttgtagtccttcaaatcttcctc |
348781 |
T |
|
| Q |
312 |
actttatgaatatgagcaatcattgttttgcttcctaac |
350 |
Q |
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||||||||||||||||||| ||||||||||||| ||||| |
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| T |
348780 |
actttatgaatatgagcaaccattgttttgctttctaac |
348742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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